| Sequence ID | dm3.chr3LHet |
|---|---|
| Location | 2,255,130 – 2,255,225 |
| Length | 95 |
| Max. P | 0.562242 |
| Location | 2,255,130 – 2,255,225 |
|---|---|
| Length | 95 |
| Sequences | 4 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 82.64 |
| Shannon entropy | 0.28222 |
| G+C content | 0.42141 |
| Mean single sequence MFE | -20.52 |
| Consensus MFE | -14.90 |
| Energy contribution | -15.02 |
| Covariance contribution | 0.13 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.562242 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3LHet 2255130 95 - 2555491 ACACGUGAAUUGGCUUUUACAAACACCAAUACACUUAUGUUCCG-UAAGACCUAGUGAUAUUGCUGAUAACAGUGCCCUGCAUGUCUUAUACCCUA ....(((.(((((............))))).))).........(-((((((...(((.....((((....))))......))))))))))...... ( -16.60, z-score = -0.57, R) >droSim1.chrU 12428562 96 + 15797150 ACACGUGAAUUAGCUUUCACAAACCCCAAUACACUUAUGUUCCGAUGAGACAUAGUGGUAUUGCUGAUAACAGUGCCCUGUACGUCUUAUACCCUA ....(((((......)))))........................(((((((((((.(((((((.......)))))))))))..)))))))...... ( -22.80, z-score = -2.52, R) >droSec1.super_61 72280 95 - 189864 ACACGUGAAUUAGCUUUCACAAACCCCAAUACACUUAUGUUCCGAUGAGACAUAGUGGUAUUGCUGAUAACAGUGCCCUGUACGUCUUAUACCCU- ....(((((......)))))........................(((((((((((.(((((((.......)))))))))))..))))))).....- ( -22.80, z-score = -2.65, R) >droEre2.scaffold_4784 880609 96 + 25762168 UGGCAAGGAUUCGUUAUUUCAAAAACCAAUACACUGCUGUUCCGAUUAGAUCGAGUCGUGUUGCUGAUCCCAGCGCACUGUACGUCUAAUACCCUA .((((..((((.(((........))).))).)..))))......((((((.((.(..((((.((((....))))))))..).))))))))...... ( -19.90, z-score = -0.38, R) >consensus ACACGUGAAUUAGCUUUCACAAACACCAAUACACUUAUGUUCCGAUGAGACAUAGUGGUAUUGCUGAUAACAGUGCCCUGUACGUCUUAUACCCUA ....(((((......)))))........................(((((((((((.(((((((.......)))))))))))..)))))))...... (-14.90 = -15.02 + 0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:51:50 2011