Locus 5617

Sequence ID dm3.chr3LHet
Location 2,243,175 – 2,243,226
Length 51
Max. P 0.866098
window7714

overview

Window 4

Location 2,243,175 – 2,243,226
Length 51
Sequences 4
Columns 65
Reading direction reverse
Mean pairwise identity 56.90
Shannon entropy 0.62508
G+C content 0.37850
Mean single sequence MFE -9.19
Consensus MFE -6.81
Energy contribution -6.12
Covariance contribution -0.69
Combinations/Pair 1.50
Mean z-score -0.39
Structure conservation index 0.74
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.98
SVM RNA-class probability 0.866098
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3LHet 2243175 51 - 2555491
--------------AAAUGAUGCUUAACGUUUGGAUGACGGAAGGUUUCAUGAAAUGCCAUUCCC
--------------..((((.((((..((((.....))))..)))).)))).............. ( -10.60, z-score =  -0.84, R)
>droSec1.super_61 64186 51 - 189864
--------------AAAUGACGCUUAACGUUUGGAUGACGGAAGGUUUCAUCAAAUGACAUUCCC
--------------..((((.((((..((((.....))))..)))).)))).............. ( -10.00, z-score =  -0.59, R)
>droSim1.chrU 12420382 51 + 15797150
--------------AAAUGACGCUUAACGUUUGGAUGACGGAAGGUUUCAUCAAAUGACAUUCCC
--------------..((((.((((..((((.....))))..)))).)))).............. ( -10.00, z-score =  -0.59, R)
>droVir3.scaffold_12963 18186775 61 + 20206255
GUUUGAUUCAAUUUCUGUAACAUUUGUUUUUCAAUUCGAAAAAGA---AGUAAAGUCCGGUUUU-
....((((..((((((.......(((.....)))........)))---)))..)))).......- (  -6.16, z-score =   0.47, R)
>consensus
______________AAAUGACGCUUAACGUUUGGAUGACGGAAGGUUUCAUCAAAUGACAUUCCC
................((((.((((..((((.....))))..)))).)))).............. ( -6.81 =  -6.12 +  -0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:51:49 2011