| Sequence ID | dm3.chr3LHet |
|---|---|
| Location | 2,208,936 – 2,209,017 |
| Length | 81 |
| Max. P | 0.905663 |
| Location | 2,208,936 – 2,209,017 |
|---|---|
| Length | 81 |
| Sequences | 5 |
| Columns | 88 |
| Reading direction | reverse |
| Mean pairwise identity | 50.30 |
| Shannon entropy | 0.86498 |
| G+C content | 0.47437 |
| Mean single sequence MFE | -19.79 |
| Consensus MFE | -9.04 |
| Energy contribution | -8.20 |
| Covariance contribution | -0.84 |
| Combinations/Pair | 1.91 |
| Mean z-score | -0.64 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.18 |
| SVM RNA-class probability | 0.905663 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3LHet 2208936 81 - 2555491 UAACUCCUCCCCUCUUAAUUGACGCUUGUCCUCGAGCGGUCAUCAUAAGGAUGGGAUGUUUUUGAG-U-CGCAUCGUUGGUGG----- .....((.((...((((..(((((((((....))))).))))...))))((((.(((........)-)-).))))...)).))----- ( -23.30, z-score = -1.17, R) >droEre2.scaffold_4845 859381 82 - 22589142 -----CUCCCCCCUCAGAAUCCUACUUGUCCUCAAGUGGGUGUUAGAAAUGUGGAAUAUUGUUGAACU-CGGGUUGUAUCGGCGUUGG -----......((.((.(((((((((((....)))))))).))).....)).))......(((((((.-......)).)))))..... ( -17.40, z-score = 0.65, R) >droYak2.chrU 302681 82 + 28119190 UAACUUUCCCCCUCUAAUUUUAUGCUUGUCCUCAAGCUGUCUCUAGAAGUAUGGAAUGUCGUUGAAAU-GAGGUAGCUGGUAC----- ..(((..(..((((..((((((.(((((....)))))....((((......)))).......))))))-))))..)..)))..----- ( -16.30, z-score = -0.64, R) >droSim1.chrU 9610387 66 + 15797150 -----CUCCCCCCUCAGGAUCCUACUUGUCCUCAAGUGGGUGUUAGAAAUAGGGAAUAUUGUUGAAUU-CGG---------------- -----.((((.......(((((((((((....)))))))).))).......)))).............-...---------------- ( -16.94, z-score = -0.36, R) >anoGam1.chr2R 45468084 85 + 62725911 UAACUCCUCCCUCCUUAAACGUCGAGCGUCCUCGAUCGACUUACCGACGUUUGCAGUGGGAUGAUGUUGUGAAUAGCUUCGGUAG--- ((((((.((((.(..(((((((((...(((.......)))....)))))))))..).)))).)).))))......((....))..--- ( -25.00, z-score = -1.71, R) >consensus UAACUCUCCCCCCCUAAAAUCAUGCUUGUCCUCAAGCGGGUGUUAGAAGUAUGGAAUGUUGUUGAAUU_CGGAUAGCUGCGGC_____ ......(((...........((((((((....))))))))............)))................................. ( -9.04 = -8.20 + -0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:51:49 2011