| Sequence ID | dm3.chr3LHet |
|---|---|
| Location | 2,147,042 – 2,147,147 |
| Length | 105 |
| Max. P | 0.778306 |
| Location | 2,147,042 – 2,147,147 |
|---|---|
| Length | 105 |
| Sequences | 4 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 73.39 |
| Shannon entropy | 0.43115 |
| G+C content | 0.50505 |
| Mean single sequence MFE | -34.83 |
| Consensus MFE | -21.48 |
| Energy contribution | -19.85 |
| Covariance contribution | -1.63 |
| Combinations/Pair | 1.45 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.778306 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3LHet 2147042 105 + 2555491 CGGUUAGCGACC--AAAAGGGUCCAUUCAGG-AUGACAACUGUUUCUAAUUUUUGGUAAAGAAUGGCC----------GGCCAUUACACGAUCCUCCACAACACCUGAGGAUCGAGCG .(((..((((((--.....))))(((((.((-(.(((....))))))..(((.....)))))))))).----------.)))......((((((((..........)))))))).... ( -30.50, z-score = -1.87, R) >droSim1.chr3h_random 1240793 115 - 1452968 CUGUUAGCGACC--AAAAAGGGCCAUUCAGG-AUGACAACUGUUUGUGAUUUUUUGUAAAGAAUGGCCAAGGUAGGGCGGGCAUUACACGAUCCUCCACCGCACCUGAGGAUCGAGCG .(((..((.(((--......(((((((((((-((.((((....)))).))))).......))))))))..)))...))..))).....((((((((..........)))))))).... ( -35.31, z-score = -1.25, R) >droSec1.super_65 147780 115 - 171001 CUGUUAGCGACC--AAAAGGGGCCAUUCAGG-AUGAUAAAUGUUUGUGUUUUUUCGUAAAGAAUGGCCAAGGUAGGGCGGGCAUUACACGAUCCUGCACCACACCUGAGGAUCGAGCG ..((...(((((--...(((((((((((...-((((.((((......))))..))))...))))))))...((.(((((((.(((....)))))))).)))).)))..)).))).)). ( -37.60, z-score = -2.04, R) >droYak2.chrX 21245147 116 + 21770863 GUGUUAGUGAUCUUAAAAGGGGCCGUCCGAGUAUAUUGUGCAAUGCAGAUUUUUGGAGAAAGGCGGCCAAGGCAGGGCGGGCAUUA-GCGA-CCUCGAGGCCAUCAGAGGAUCGCAAG ......((((((((......((((...((((....((((..(((((...((((....))))..((.((......)).)).))))).-))))-.)))).)))).....))))))))... ( -35.90, z-score = -0.70, R) >consensus CUGUUAGCGACC__AAAAGGGGCCAUUCAGG_AUGACAACUGUUUCUGAUUUUUGGUAAAGAAUGGCCAAGGUAGGGCGGGCAUUACACGAUCCUCCACCACACCUGAGGAUCGAGCG ......((............((((((((......(((....))).(........).....))))))))....................((((((((..........)))))))).)). (-21.48 = -19.85 + -1.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:51:48 2011