| Sequence ID | dm3.chr3LHet |
|---|---|
| Location | 2,092,578 – 2,092,701 |
| Length | 123 |
| Max. P | 0.993999 |
| Location | 2,092,578 – 2,092,701 |
|---|---|
| Length | 123 |
| Sequences | 4 |
| Columns | 123 |
| Reading direction | reverse |
| Mean pairwise identity | 50.22 |
| Shannon entropy | 0.76574 |
| G+C content | 0.42474 |
| Mean single sequence MFE | -31.82 |
| Consensus MFE | -13.48 |
| Energy contribution | -16.60 |
| Covariance contribution | 3.12 |
| Combinations/Pair | 1.68 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.66 |
| SVM RNA-class probability | 0.993999 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3LHet 2092578 123 - 2555491 AAAGGUGGCUUGAAAGAACUUAUCAACAGUUUUGGCGUAGCUAGAGAUAGUUUUCGUCGAGCCGAUGAUCUUCUUUCCGCGCCUAAUUCACAGUUUAAUGGCCUUAAGCUAUUCGAUGAAUCU ..(((((.(..(((((((...((((.(.((((.((((.(((((....)))))..)))))))).).)))).))))))).)))))).(((((..(...((((((.....)))))))..))))).. ( -31.00, z-score = -0.56, R) >droPer1.super_74 135219 102 + 351172 ---------------------CGGAGUGGCUUUAAGGAGCUGACCGUUGGUUUUAAAAACCAAUACGAUCGGCUUCUAGCCAUGGAGGCUCAGCUUAGCGGUUUAAAAUUGCUGAAUGAGUCU ---------------------....((((((...(((((((((.((((((((.....)))))..))).)))))))))))))))..(((((((..((((((((.....)))))))).))))))) ( -44.10, z-score = -5.42, R) >droWil1.scaffold_181154 3143256 102 - 4610121 ---------------------AGAGAUAGUUUUGACACUUUGAGGGCAGGUUUCAACAAAUUCCAAGCUUAGUUUACUGCGGUGGAGACUCAGUUUAGAAGCUUAUCGCUUAUGAAUGAGUCU ---------------------.(((((.(((((.(.....).)))))..))))).......((((.((..........))..))))((((((.((((.((((.....)))).)))))))))). ( -23.90, z-score = -0.05, R) >droVir3.scaffold_12958 2343666 102 - 3547706 ---------------------AGGAGUGGCUUUAGGGGCCUGAUUGUUGGUUUUCGUAAACUUAACGAUCAACUCACAGCCCUGGACAUCCAAUUUAAUAGCCUUAAACUGUUGAAUGAGUCU ---------------------..((((((((.....))))(((((((((((((....)))).)))))))))))))........((((.((..(((((((((.......))))))))))))))) ( -28.30, z-score = -1.41, R) >consensus _____________________AGGAAUAGCUUUAACGAACUGAGAGUUGGUUUUAAUAAACUCAACGAUCAGCUUACAGCCCUGGAGACUCAGUUUAAUAGCCUAAAACUGUUGAAUGAGUCU ..............................(((((((..(((.(((((((((.(((......))).))))))))).))))))))))((((((.(((((((((.....))))))))))))))). (-13.48 = -16.60 + 3.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:51:47 2011