Locus 5612

Sequence ID dm3.chr3LHet
Location 2,067,198 – 2,067,316
Length 118
Max. P 0.711195
window7708

overview

Window 8

Location 2,067,198 – 2,067,316
Length 118
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 78.49
Shannon entropy 0.29981
G+C content 0.35818
Mean single sequence MFE -25.94
Consensus MFE -19.11
Energy contribution -18.90
Covariance contribution -0.21
Combinations/Pair 1.18
Mean z-score -1.59
Structure conservation index 0.74
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.48
SVM RNA-class probability 0.711195
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3LHet 2067198 118 - 2555491
-CUGCAUCAGCCAGCAAAUUUCAAUUCCACAAUGCAGUGAAAAAAUUUCAGCAUUAAGCUUUUAUUCUAAUCAUAAUUGAAAGUUUAAAAAGUUUCU-AAAGAAAAGCUUCUGGCGGCGG
-((((....(((((.............(((......)))..........(((.(((((((((((.............)))))))))))....((((.-...)))).))).))))).)))) ( -25.22, z-score =  -1.54, R)
>droYak2.chrU 13060549 118 + 28119190
-CUGCAUCGGUCAGCAUAAUUGAAUUUCACAAUGCAGAGAAAUAAUUUCAGCAUCAAGCUUUUAUUCUAAACAUAAUUGAAAGUUCAAGAAGUUUCC-AAAGAAAAGCUUCUGGCCGAGG
-.....((((((((.................((((.((((.....)))).)))).((((((((.....((((....((((....))))...))))..-....)))))))))))))))).. ( -26.70, z-score =  -1.75, R)
>droSim1.chrU 5086230 108 - 15797150
AUUGCAUCGAUCAGCAUAAUUGAAUUUCACAAUGCAGUGGAAAAUUUCCAGCAUAAAGCUUUU------------AUCGAAAGUUCGGUAAUUUUCCGAAAGAAAAGCUUCUGGCCGAGG
......(((..(((.................((((..((((.....)))))))).((((((((------------..(....)(((((.......)))))..)))))))))))..))).. ( -25.90, z-score =  -1.48, R)
>consensus
_CUGCAUCGGUCAGCAUAAUUGAAUUUCACAAUGCAGUGAAAAAAUUUCAGCAUAAAGCUUUUAUUCUAA_CAUAAUUGAAAGUUCAAAAAGUUUCC_AAAGAAAAGCUUCUGGCCGAGG
......((((((((.................((((..((((.....)))))))).((((((((.............((((....))))..............)))))))))))))))).. (-19.11 = -18.90 +  -0.21)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:51:44 2011