| Sequence ID | dm3.chr3LHet |
|---|---|
| Location | 2,024,167 – 2,024,262 |
| Length | 95 |
| Max. P | 0.960014 |
| Location | 2,024,167 – 2,024,262 |
|---|---|
| Length | 95 |
| Sequences | 4 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 67.43 |
| Shannon entropy | 0.50754 |
| G+C content | 0.43075 |
| Mean single sequence MFE | -27.61 |
| Consensus MFE | -16.88 |
| Energy contribution | -17.38 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.67 |
| SVM RNA-class probability | 0.960014 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3LHet 2024167 95 + 2555491 AGCGGUCGGCUUGACGGCCGCGAUCAGCUUUGGUAAAAUAGAAUAAGUCCA---GUUUGAUUUCAAUUAU------AAUAAAGAGCACUCGCUCAAGAAUUCUA- .(((((((......)))))))((((((..((((...............)))---).))))))........------......((((....))))..........- ( -25.26, z-score = -1.62, R) >droSec1.super_66 157636 105 + 176163 AGCGGUCGGCUUGGCGGCCGCGGUUAGCUUUAGUACAGUUGAAUAAGUUUUACAGUUUUGCUUUGAGGGCUGAUUCAAUAAAGAGCACAAGCUCAUAAAUCGAAA .(((((((......)))))))((((............(((((((.((((((.(((.......))))))))).)))))))...((((....))))...)))).... ( -31.10, z-score = -1.41, R) >droYak2.chr2L_random 2199000 94 + 4064425 AGCGGUCGACUUGCCGGCCGCGGUUAGCUCUAGUGCAGUUAGAUAAGUUUUA--GUUUUGCUUUGACCACUGAUUCAAUAAUGAGCAUAA--UCGAAA------- .(((((((......)))))))(((((((((...((.((((((....(((..(--(.....))..)))..)))))))).....)))).)))--))....------- ( -29.80, z-score = -2.39, R) >droEre2.scaffold_4929 892055 89 - 26641161 AGCGGUCGACUUGCCGGCCGCGAAUAGCUGGAGUAAAAUAGAAUAAGUUCA---GUUUGGAUUUUAUCGU------AAUAAAGAGCAGUCGCUCCUAA------- .(((((((......)))))))........(((((.((((.(((....))).---)))).((((...((..------......))..)))))))))...------- ( -24.30, z-score = -1.16, R) >consensus AGCGGUCGACUUGCCGGCCGCGAUUAGCUUUAGUAAAAUAGAAUAAGUUCA___GUUUGGCUUUGAUCAC______AAUAAAGAGCACAAGCUCAAAA_______ .(((((((......))))))).............................................................((((....))))........... (-16.88 = -17.38 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:51:42 2011