| Sequence ID | dm3.chr3LHet |
|---|---|
| Location | 2,021,542 – 2,021,638 |
| Length | 96 |
| Max. P | 0.872183 |
| Location | 2,021,542 – 2,021,638 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 121 |
| Reading direction | forward |
| Mean pairwise identity | 64.53 |
| Shannon entropy | 0.57850 |
| G+C content | 0.33306 |
| Mean single sequence MFE | -18.68 |
| Consensus MFE | -9.79 |
| Energy contribution | -9.83 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.28 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.01 |
| SVM RNA-class probability | 0.872183 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3LHet 2021542 96 + 2555491 UUAAUCGUAAUCCACUCAACCUCGGACAGAAGCUUUUCUUU-AGGAUUUUCUUGAGCUUUCAAAUGAGUUUUAGGAUAAAAGCUUUACACUGAAAUU------------------------ .....................((((...(((((((((.(((-(((((((..(((......)))..))))))))))..)))))))))...))))....------------------------ ( -18.40, z-score = -0.83, R) >droAna3.scaffold_13079 627940 116 - 742402 UUAAUC-UGAUCCAAAGAACCUCUGUCAUGAGCUUUUCUUUUUGAA---CUUGAAAAAUUUAGUUUAUGUUUAGAUUAAAAGCUUAA-GAUGAAACUGUCGCAUCUCAUUAAGAUAAAACU ....((-(.......))).....((((.(((((((((...((((((---(.((((........)))).)))))))..)))))))))(-((((.........)))))......))))..... ( -19.90, z-score = -0.76, R) >droYak2.chrU 27592298 95 + 28119190 UGAAUCCUGAUCCAUUCAACCUCGGCCAGAAGCUUUUCUUU-GGAAACUUCUUGAACUUUCAA-UUAUGUUUAGAAUAAAAGCUUGAUGCUGAAAUU------------------------ (((((........)))))...(((((...((((((((.(((-..((((...((((....))))-....)))).))).))))))))...)))))....------------------------ ( -19.50, z-score = -1.47, R) >droSec1.super_60 122120 94 + 163194 UUAAUCCUGAUCCAAUAAACCUCGGCCUUAAGCUUUUCAUU--CAAACUUUUUGAACUUUCAG-UUAUGUUUAGGAUAAAAGCGUUAUGCUGAAAUU------------------------ .....................(((((.....((((((.(((--(((((...((((....))))-....)))).)))))))))).....)))))....------------------------ ( -18.00, z-score = -1.86, R) >droSim1.chrU 12659137 84 + 15797150 UAAGUCCUAAUGCAAUCAACCUCGGCCAGAAGCUUUUCUUUCGGAAAAUUACCGAACUUUCGA-U------------AAAAGCUUUAUGCUGGAAAU------------------------ .....................(((((..(((((((((...((((((...........))))))-.------------)))))))))..)))))....------------------------ ( -17.60, z-score = -1.46, R) >consensus UUAAUCCUGAUCCAAUCAACCUCGGCCAGAAGCUUUUCUUU_GGAAACUUCUUGAACUUUCAA_UUAUGUUUAGAAUAAAAGCUUUAUGCUGAAAUU________________________ .....................(((((...((((((((..............((((....))))..............))))))))...)))))............................ ( -9.79 = -9.83 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:51:41 2011