| Sequence ID | dm3.chr3LHet |
|---|---|
| Location | 1,999,568 – 1,999,618 |
| Length | 50 |
| Max. P | 0.642828 |
| Location | 1,999,568 – 1,999,618 |
|---|---|
| Length | 50 |
| Sequences | 4 |
| Columns | 53 |
| Reading direction | forward |
| Mean pairwise identity | 78.96 |
| Shannon entropy | 0.32644 |
| G+C content | 0.41792 |
| Mean single sequence MFE | -9.03 |
| Consensus MFE | -6.69 |
| Energy contribution | -6.50 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.642828 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3LHet 1999568 50 + 2555491 GUCCUGUCAUCCCUGACAAUCACAAUGUUACCGACCUUAUAAUUGGUUUC--- ....(((((....)))))..............((((........))))..--- ( -7.00, z-score = -0.74, R) >droSim1.chr3h_random 643172 50 + 1452968 UUCUCGUCACUUUUGACAAUCACAAUGUCACCGACCAUUAAAUUGGUUUC--- .............(((((.......)))))..(((((......)))))..--- ( -7.90, z-score = -1.20, R) >droSec1.super_5 5742286 50 - 5866729 UUCUCGUCACUUCUGACAAUCACAAUGUCACCGACCAUUUAAUUGGUUUC--- .....((((....))))...............(((((......)))))..--- ( -7.80, z-score = -1.29, R) >droEre2.scaffold_4929 768583 53 - 26641161 GUCCUGUCAUUCUUGACAGUCACGGUGUAACCGACCCUUAAAUCGGUUUCUUC ((.((((((....))))))..))...(.((((((........)))))).)... ( -13.40, z-score = -2.35, R) >consensus GUCCCGUCACUCCUGACAAUCACAAUGUCACCGACCAUUAAAUUGGUUUC___ .....((((....))))............(((((........)))))...... ( -6.69 = -6.50 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:51:40 2011