| Sequence ID | dm3.chr3LHet |
|---|---|
| Location | 1,985,254 – 1,985,312 |
| Length | 58 |
| Max. P | 0.952153 |
| Location | 1,985,254 – 1,985,312 |
|---|---|
| Length | 58 |
| Sequences | 4 |
| Columns | 59 |
| Reading direction | reverse |
| Mean pairwise identity | 58.09 |
| Shannon entropy | 0.67028 |
| G+C content | 0.45853 |
| Mean single sequence MFE | -12.62 |
| Consensus MFE | -6.95 |
| Energy contribution | -6.45 |
| Covariance contribution | -0.50 |
| Combinations/Pair | 1.75 |
| Mean z-score | -1.04 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.58 |
| SVM RNA-class probability | 0.952153 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3LHet 1985254 58 - 2555491 AGCCGAUGAUCUUCUUUCCGCGCCUAAUUCACA-GUUUAAUGGCCUUAAGCUAUUAGAU .((.((..........)).))............-((((((((((.....)))))))))) ( -10.20, z-score = -0.61, R) >dp4.chr2 18386479 53 - 30794189 -----ACAAUCGGCUUCUAGCCAUGAAGUCUCA-GUUUGGCAGUCUGCAGCUGCUGAAU -----......((((((.......))))))...-(((..(((((.....)))))..))) ( -17.30, z-score = -1.53, R) >droPer1.super_87 50916 54 - 209488 -----ACGAUCGGCUCCUAGCCAUGGAAUCUCAUUUUUGGCAGUCUGCAACUGCUGAAU -----......(((.....))).............((..(((((.....)))))..)). ( -13.90, z-score = -1.04, R) >droVir3.scaffold_12958 2869401 58 - 3547706 ACUAAACGAUCAGCUCACCGCCCUGCAUACCCA-UUUUAAGAUCCUUAAACUGUGGGAU ............((..........))...((((-(((((((...))))))..))))).. ( -9.10, z-score = -0.96, R) >consensus _____ACGAUCGGCUCCCAGCCAUGAAUUCUCA_GUUUAACAGCCUGAAACUGCUGAAU ...........(((.....))).............(((((((((.....))))))))). ( -6.95 = -6.45 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:51:38 2011