| Sequence ID | dm3.chr3LHet |
|---|---|
| Location | 1,942,430 – 1,942,512 |
| Length | 82 |
| Max. P | 0.677304 |
| Location | 1,942,430 – 1,942,512 |
|---|---|
| Length | 82 |
| Sequences | 3 |
| Columns | 84 |
| Reading direction | forward |
| Mean pairwise identity | 60.24 |
| Shannon entropy | 0.55843 |
| G+C content | 0.41768 |
| Mean single sequence MFE | -13.67 |
| Consensus MFE | -5.23 |
| Energy contribution | -6.23 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.44 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.38 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.677304 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3LHet 1942430 82 + 2555491 CACUCGACUCACACUCA-AGAAUUUUCAGUGCGGGUGCCACUCACCACUCACAUCGCGGGUACUUACAAGCACUCAGUCAAAA- .....((((........-.((....))(((((.((((.....))))((((.......))))........))))).))))....- ( -16.10, z-score = -1.41, R) >droWil1.scaffold_180762 28462 82 - 61563 CACCCAAAUCACACUUA-UAAAUUUUGAGUGCUUGUCGCACUCACAAACAGCAAGAAAAGAA-UUACACACUCAAACGCACAAA .................-.......(((((((.....)))))))..................-..................... ( -10.30, z-score = -1.34, R) >droMoj3.scaffold_6541 1378969 80 - 2543558 CACCUUACUCACACUCAAUAAAAUUUGUGUGCCGGUGCUAAUCAACACUGGUUCAGCAA--A-UCAUAAACACACACUUAUAA- ......................((((((..(((((((........)))))))...))))--)-)...................- ( -14.60, z-score = -2.52, R) >consensus CACCCAACUCACACUCA_UAAAUUUUGAGUGCCGGUGCCACUCACCACUAGCAAAGCAAG_A_UUACAAACACACACUCAAAA_ ............................(((((((((........))))))))).............................. ( -5.23 = -6.23 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:51:37 2011