| Sequence ID | dm3.chr3LHet |
|---|---|
| Location | 1,812,312 – 1,812,363 |
| Length | 51 |
| Max. P | 0.741795 |
| Location | 1,812,312 – 1,812,363 |
|---|---|
| Length | 51 |
| Sequences | 6 |
| Columns | 58 |
| Reading direction | forward |
| Mean pairwise identity | 67.04 |
| Shannon entropy | 0.57689 |
| G+C content | 0.37440 |
| Mean single sequence MFE | -8.92 |
| Consensus MFE | -5.29 |
| Energy contribution | -5.77 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.33 |
| Mean z-score | -0.79 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.56 |
| SVM RNA-class probability | 0.741795 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3LHet 1812312 51 + 2555491 UGGAUAGCUAGUCGUAUAGCAUAUCCUU-CAGUUGAUCAGUACCGUACUAAA------ .(((((((((......)))).)))))..-.......................------ ( -10.10, z-score = -1.13, R) >droSim1.chrU 14994729 51 - 15797150 UGGAUUGCUAGUUGUAUAGCGUAUCCUU-CAGUUGAUCAUCACCUUACAAAA------ .(((((((((......))))).))))..-.......................------ ( -9.40, z-score = -1.15, R) >droSec1.super_174 16155 52 + 34763 UGGAUAGUUAGUCACAUAACGUAUCUUUUUAAUGGAUUAGUACCGUACUAAA------ .(((((((((......)))).)))))..........((((((...)))))).------ ( -7.30, z-score = -0.10, R) >droYak2.chrU 27712963 51 - 28119190 UGGAUAGCUAGUUGUAUAGCGUAUCCUU-CAAUGGAUCAGUACCGUACUAAA------ .(((((((((......)))).)))))..-..((((.......))))......------ ( -11.90, z-score = -1.43, R) >droEre2.scaffold_4784 25446405 50 + 25762168 GGGAUAGCUAGUUGUAUAGCGUAUCCUUUCAAUUGCCCAGUACCAUAUAA-------- ((((((((((......)))).)))))).......................-------- ( -10.60, z-score = -1.19, R) >droVir3.scaffold_6580 3455 55 - 6818 -CACCAGUUGUUUGCAUAA-GCCUCUCUUUAAUUGAUC-GUAUCACUCACGAACUUUA -...((((((...((....-)).......)))))).((-((.......))))...... ( -4.20, z-score = 0.25, R) >consensus UGGAUAGCUAGUUGUAUAGCGUAUCCUU_CAAUUGAUCAGUACCGUACAAAA______ .(((((((((......)))).)))))................................ ( -5.29 = -5.77 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:51:32 2011