| Sequence ID | dm3.chr2L |
|---|---|
| Location | 3,972,446 – 3,972,537 |
| Length | 91 |
| Max. P | 0.960988 |
| Location | 3,972,446 – 3,972,537 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 88.51 |
| Shannon entropy | 0.19927 |
| G+C content | 0.41276 |
| Mean single sequence MFE | -28.20 |
| Consensus MFE | -18.42 |
| Energy contribution | -18.86 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.04 |
| Mean z-score | -3.06 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.69 |
| SVM RNA-class probability | 0.960988 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 3972446 91 - 23011544 AAAAAUUACCUCAGUAAAAUGAAUCUCCACCGGGGAUUCGUUU-UGCGAGAGAGGAACGCUUGAGAAUGCCUGGGAAUUUUUUUUUUUUUUC (((((((.((((.(((((((((((((((...))))))))))))-)))....))))...((........)).....))))))).......... ( -26.30, z-score = -2.09, R) >droSec1.super_5 2075277 84 - 5866729 AAAAAUUACCUCAGUAAAAUGAAUCUCCACCGGGGAUUCGUUU-UGCGAGAGAGGAACGAUGGAGAAUGCCUGGGCAUUUUUUUC------- ........((((.(((((((((((((((...))))))))))))-)))....))))......(((((((((....)))))))))..------- ( -32.50, z-score = -4.49, R) >droEre2.scaffold_4929 4030775 86 - 26641161 AAAAAUUACCUCAGUAAAAUGAAUCUCCACCGGGGAUUCGUUU-UGCGAGAGAAGAACGCUUGAGAAUGCCAAGGAAUUUUUUCCUC----- .........(((.(((((((((((((((...))))))))))))-)))..)))......((........))..(((((....))))).----- ( -26.90, z-score = -3.14, R) >droYak2.chr2L 3988026 89 - 22324452 AAAAAUUACCUCAGUAAAAUGAAUCUCCACCGGGGAUUCGUUUGCAAGAGAGAGGAACGCUUGAGAAUGCCUGGGAAUUUUUUUUCCCC--- ........((((....((((((((((((...))))))))))))........))))...((........))..(((((......))))).--- ( -25.00, z-score = -1.50, R) >droSim1.chr2L 3931046 84 - 22036055 AAAAAUUACCUCAGUAAAAUGAAUCUCCACCAGGGAUUCGUUU-UGCGAGAGAGGAACGAUGGAGAAUGCCUGGGCAUUUUUUUC------- ........((((.((((((((((((((.....)))))))))))-)))....))))......(((((((((....)))))))))..------- ( -30.30, z-score = -4.08, R) >consensus AAAAAUUACCUCAGUAAAAUGAAUCUCCACCGGGGAUUCGUUU_UGCGAGAGAGGAACGCUUGAGAAUGCCUGGGAAUUUUUUUC_______ ........((((.((((((((((((((.....))))))))))).)))....)))).......((((((.(....).)))))).......... (-18.42 = -18.86 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:15:05 2011