| Sequence ID | dm3.chr2L |
|---|---|
| Location | 435,359 – 435,492 |
| Length | 133 |
| Max. P | 0.544165 |
| Location | 435,359 – 435,492 |
|---|---|
| Length | 133 |
| Sequences | 4 |
| Columns | 133 |
| Reading direction | reverse |
| Mean pairwise identity | 82.76 |
| Shannon entropy | 0.27925 |
| G+C content | 0.57540 |
| Mean single sequence MFE | -43.38 |
| Consensus MFE | -28.25 |
| Energy contribution | -30.25 |
| Covariance contribution | 2.00 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.544165 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 435359 133 - 23011544 CCAACAAUCGCCAAAGUCGAACGAUCGAUUCGAUCGAUCAGACCCGAGACCCCAGACCUCACAGAGGUCCAACUACGAACUACGUAUCGUGGGGCUGGCGGGGCAGUCGGAGGUGCCGGAACCAAGACCUAUA ((.....(((((...(((((.((((((...)))))).)).)))...((.(((((((((((...))))))....((((.....))))...))))))))))))((((.(....).)))))).............. ( -45.60, z-score = -1.33, R) >droSim1.chr2L 441808 130 - 22036055 CCAACAAUCGCCAAAGUCGAACGAUCGAUUCUAUCGAUCAGACCCCAGACCCCAGACCUCAGAGAGGUCCA---AAGAACUACGUAUCGUGGGGCAGGCGGGGCAGGCGGAGGUGCCGGAACCGAGACCUAUA .......(((((...(((....(((((((...))))))).)))....(.((((.((((((...))))))..---..(..(((((...)))))..)....))))).)))))((((..((....))..))))... ( -46.50, z-score = -1.86, R) >droSec1.super_14 419089 130 - 2068291 CCAACAAUCGCCAAAGUCGAACGAUCGAUUCGAUCGAUCAGACCCCAGACCCCAGACCUCAGAGAGGUCCA---AAGAACUACGUAUCGUGGGGCAGGCGGGGCAGGCGGAGGAGCCGGAACCGAGACCUAUA .......(((((...(((((.((((((...)))))).)).)))....(.((((.((((((...))))))..---..(..(((((...)))))..)....))))).)))))(((...((....))...)))... ( -45.00, z-score = -1.53, R) >droYak2.chr2L 420111 102 - 22324452 CCAGCAAUCGCCAAAGUCGAACGAUCGAUUCGAUCGAUCAGACCCCAGACCACA----------------------GAACUGUGGAUCGU---------GGGGCAAGCGGAGGUGCCGGAACCAAGACCCAUA ((.(((.((((.......((.((((((...)))))).)).(.((((((((((((----------------------....))))).)).)---------)))))..))))...))).)).............. ( -36.40, z-score = -2.62, R) >consensus CCAACAAUCGCCAAAGUCGAACGAUCGAUUCGAUCGAUCAGACCCCAGACCCCAGACCUCAGAGAGGUCCA___AAGAACUACGUAUCGUGGGGCAGGCGGGGCAGGCGGAGGUGCCGGAACCAAGACCUAUA .......(((((...(((((.((((((...)))))).)).)))....(.((((.((((((...)))))).......(..(((((...)))))..)....))))).))))).(((......))).......... (-28.25 = -30.25 + 2.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:05:50 2011