| Sequence ID | dm3.chr3LHet |
|---|---|
| Location | 1,791,651 – 1,791,724 |
| Length | 73 |
| Max. P | 0.992568 |
| Location | 1,791,651 – 1,791,724 |
|---|---|
| Length | 73 |
| Sequences | 4 |
| Columns | 74 |
| Reading direction | forward |
| Mean pairwise identity | 51.63 |
| Shannon entropy | 0.77484 |
| G+C content | 0.38570 |
| Mean single sequence MFE | -15.28 |
| Consensus MFE | -6.49 |
| Energy contribution | -6.30 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.69 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.55 |
| SVM RNA-class probability | 0.992568 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3LHet 1791651 73 + 2555491 UUUUUCCUGUUGGACACACUGAGCACG-UUCGAUGCUAUAAUAGGCUUCGACUUGCUAACGCGAGCAGGAGUGG ...((((((((.(........((((.(-(.(((.(((......))).))))).))))....).))))))))... ( -23.30, z-score = -2.25, R) >droPer1.super_109 48944 60 - 183219 ---------AUAGAUA----GACUACA-UUUUAUGAGAUCAUAGGACUUGACCUACUAAAACAAGUAGGGGCAG ---------.......----.......-(((((((....)))))))..((.((((((......))))))..)). ( -12.00, z-score = -2.18, R) >dp4.Unknown_group_9 5295 73 + 53872 UUCUUCCUAUUAGAUUCCAUGACUACA-UUCGAUGGGAUCAUAUGACUUGACCUACUAAAACAAGUAGGGGCAG ..((.((.....((((((((((.....-.)).))))))))...........((((((......)))))))).)) ( -19.10, z-score = -2.57, R) >droSim1.chr3h_random 1301297 56 + 1452968 ------------------AUGUUUAGAAUCCGACUUAAUAAUUGGGUACAAUCUAUUAAAGAAAAUUGGAGCUA ------------------..........((((((((((((((((....)))).)))).)))....))))).... ( -6.70, z-score = -0.09, R) >consensus _________UUAGAUA__AUGACUACA_UUCGAUGAGAUAAUAGGACUCGACCUACUAAAACAAGUAGGAGCAG ............................(((((((....))))))).....((((((......))))))..... ( -6.49 = -6.30 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:51:30 2011