| Sequence ID | dm3.chr3LHet |
|---|---|
| Location | 1,790,016 – 1,790,072 |
| Length | 56 |
| Max. P | 0.989820 |
| Location | 1,790,016 – 1,790,072 |
|---|---|
| Length | 56 |
| Sequences | 7 |
| Columns | 58 |
| Reading direction | reverse |
| Mean pairwise identity | 65.91 |
| Shannon entropy | 0.68584 |
| G+C content | 0.44015 |
| Mean single sequence MFE | -14.20 |
| Consensus MFE | -7.22 |
| Energy contribution | -7.70 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.80 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.39 |
| SVM RNA-class probability | 0.989820 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3LHet 1790016 56 - 2555491 --CCCGCAGAAUUUAUAUGUGUAAAACUUAGCAAUCGUUUGCUGGAGUUGCUGCACAG --...............((((((.((((((((((....))))).)))))..)))))). ( -16.10, z-score = -2.32, R) >droSim1.chr2h_random 469334 56 + 3178526 --CCCGCAGAAUUUAUAUGUGUAAAACUUAGCAAUCGUUUGCUGGAGUUUCUGCACAG --...............(((((((((((((((((....))))).)))))).)))))). ( -16.20, z-score = -2.99, R) >droSec1.super_401 175 55 - 14122 --CCCGCAGAA-UUAUAUGUGUAAAACUUAGCAAUCGUUUGCUGGAGUUGCUGCACAG --.........-.....((((((.((((((((((....))))).)))))..)))))). ( -16.10, z-score = -2.33, R) >droYak2.chrU 1941374 56 - 28119190 --CCCGCAGAAUUUUUAUAUGUAAAACUUAGCAAUCGUUUGCUGGAGUUGCUGCACAG --...((((...............((((((((((....))))).))))).)))).... ( -12.79, z-score = -1.28, R) >droEre2.scaffold_4929 26205955 56 - 26641161 --CCCGCAGAAUUUAUAUGUGUAAAACAUAGCAAUCGUUUGCUGGAGUUGCUGCACAG --...(((((((((.(((((.....)))))((((....))))..))))).)))).... ( -14.80, z-score = -1.75, R) >droAna3.scaffold_13417 3837691 58 + 6960332 GUCCCAAAACACACGAGAGCGAACCAACAGAUAUUUGUCAGUUCGACUGGGUGUAUUA ........((((.(.((..(((((..((((....))))..))))).)).))))).... ( -14.00, z-score = -1.52, R) >dp4.Unknown_group_70 13035 56 - 32930 --UGCAAAAAAACUGCGCAUUUGACUCUCGGAAGCCGCAAGCAGAGGAAGCGAGACAG --..........((.(((.((((.((..(((...)))..))))))....))))).... ( -9.40, z-score = 1.17, R) >consensus __CCCGCAGAAUUUAUAUGUGUAAAACUUAGCAAUCGUUUGCUGGAGUUGCUGCACAG .................(((((..((((((((((....)))))).))))...))))). ( -7.22 = -7.70 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:51:29 2011