| Sequence ID | dm3.chr3LHet |
|---|---|
| Location | 1,781,403 – 1,781,459 |
| Length | 56 |
| Max. P | 0.880698 |
| Location | 1,781,403 – 1,781,459 |
|---|---|
| Length | 56 |
| Sequences | 7 |
| Columns | 65 |
| Reading direction | reverse |
| Mean pairwise identity | 61.42 |
| Shannon entropy | 0.70229 |
| G+C content | 0.50914 |
| Mean single sequence MFE | -9.82 |
| Consensus MFE | -5.52 |
| Energy contribution | -5.50 |
| Covariance contribution | -0.02 |
| Combinations/Pair | 1.40 |
| Mean z-score | -0.60 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.05 |
| SVM RNA-class probability | 0.880698 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3LHet 1781403 56 - 2555491 ACUCCCCCC-UUAAAUUAGACGCCGUCCUCGGUGACAGCCAAUUCGUCAAUGGAUUU-------- ..(((...(-(......)).(((((....))))).................)))...-------- ( -8.10, z-score = 0.09, R) >droYak2.chr2L 21847948 56 - 22324452 ACUCCCCCC-UUAAAUUAGACGCCGUCCUCGGUGACAGCCAAUUCGUCAAUGGAUUU-------- ..(((...(-(......)).(((((....))))).................)))...-------- ( -8.10, z-score = 0.09, R) >droAna3.scaffold_13280 1309456 56 - 1428709 ACUCCCCCC-UUAAAUUGGACGCCGACCUCGGUGACUGCCAAUUCGUCGAUGGACCU-------- ..(((....-...((((((.(((((....)))))....)))))).......)))...-------- ( -14.44, z-score = -1.85, R) >dp4.Unknown_group_548 11408 63 - 13788 -ACUCCCCCCCUUGAGCAGUCGCCGUCCCCGGCGCACUUAGUCUUGCC-AUUAAUCCAUUGAUUU -.(((........))).((((((((....))))).)))..........-................ ( -10.30, z-score = -1.25, R) >droWil1.scaffold_181075 459828 56 - 1141854 -UCUCCCCUUCUAAGUUCAUUGCCGUCCUCGGUGAUGCAUGACUCUUGGACGAAUUU-------- -......(.((((((..(((..(((....)))..))).......)))))).).....-------- ( -13.30, z-score = -1.82, R) >droVir3.scaffold_12392 3252 57 + 4578 ACUCCCCCCUUUAAAUUAGACGCCGUCCUCGGUGACAGCCAAUUCGUCGAUGGACUU-------- ........................(((((((..((........))..))).))))..-------- ( -11.90, z-score = -0.97, R) >droMoj3.scaffold_6473 5427687 56 + 16943266 -CCUCCCCCACUUAGAUGAAUGACGUCCUCGGCUUUCUUGAAACUGUUAAUUAAUGU-------- -...............(((.(((((...((((.....))))...))))).)))....-------- ( -2.60, z-score = 1.50, R) >consensus ACUCCCCCC_UUAAAUUAGACGCCGUCCUCGGUGACAGCCAAUUCGUCAAUGGAUUU________ ....................(((((....)))))............................... ( -5.52 = -5.50 + -0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:51:28 2011