| Sequence ID | dm3.chr3LHet |
|---|---|
| Location | 1,757,608 – 1,757,673 |
| Length | 65 |
| Max. P | 0.896424 |
| Location | 1,757,608 – 1,757,673 |
|---|---|
| Length | 65 |
| Sequences | 5 |
| Columns | 72 |
| Reading direction | forward |
| Mean pairwise identity | 53.38 |
| Shannon entropy | 0.84262 |
| G+C content | 0.43500 |
| Mean single sequence MFE | -15.26 |
| Consensus MFE | -7.90 |
| Energy contribution | -7.58 |
| Covariance contribution | -0.32 |
| Combinations/Pair | 2.00 |
| Mean z-score | -0.38 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.13 |
| SVM RNA-class probability | 0.896424 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3LHet 1757608 65 + 2555491 GUGGCGGAACAAGUGCUGCUGCGAUAAAAAAUUUGC-------UGUUAACAAAUAAAGCCUGGCACUUUGAA ..........((((((((((((((........))))-------((....)).....)))..))))))).... ( -12.40, z-score = 0.37, R) >droSec1.super_140 35343 66 + 84231 GUGGCGGCAAGUUUUCUGCUGCGAUACAAAUUUUGGCUGACUCGCUUAACAAAUAAAUUCUGGCAC------ (((((((((.......))))))............(((......))).................)))------ ( -11.20, z-score = 0.55, R) >droYak2.chrX_random 221185 72 - 1802292 GUGGCAGCAAGUCUGCUGCUGUAAUACAAAUCUUGCAUGACUUCGUCAACUACUGAAUCCUGACAUUUUGAA (..((((((....))))))..)....((((...((((.((.((((........)))))).)).)).)))).. ( -15.90, z-score = -1.09, R) >droEre2.scaffold_4837 40156 70 - 56420 GCGGGGGCAAGUAUGCUGACGCGAUACAAAUUUUGCCCGAAUGUGUCAGCAGCAUAAUCCUGGCGCAUUG-- ....((((((((((((....)).)))).....)))))).((((((((((.(......).)))))))))).-- ( -23.70, z-score = -1.18, R) >droAna3.scaffold_13045 961039 64 - 1551108 -UUUUCGGAAAUUUCCUGAAAUAGUGGCCAAUUCGC------UUUUUUAAGGUUGAGUCUGGGUCUUUCAA- -..((((((.....(((((((.(((((.....))))------).)))).))).....))))))........- ( -13.10, z-score = -0.54, R) >consensus GUGGCGGCAAGUUUGCUGCUGCGAUACAAAUUUUGC__GA_UUUGUUAACAAAUAAAUCCUGGCACUUUGA_ (((((((((....))))))))).................................................. ( -7.90 = -7.58 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:51:27 2011