Locus 5595

Sequence ID dm3.chr3LHet
Location 1,750,961 – 1,751,069
Length 108
Max. P 0.974237
window7685

overview

Window 5

Location 1,750,961 – 1,751,069
Length 108
Sequences 3
Columns 118
Reading direction forward
Mean pairwise identity 53.20
Shannon entropy 0.65284
G+C content 0.53215
Mean single sequence MFE -40.03
Consensus MFE -16.58
Energy contribution -15.60
Covariance contribution -0.98
Combinations/Pair 1.55
Mean z-score -1.94
Structure conservation index 0.41
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.90
SVM RNA-class probability 0.974237
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3LHet 1750961 108 + 2555491
UUGGCAGUCUUGUCG------UUGAUGAUGAUGAUUCCAUCGUCUACAUAGGUAAUGGGGUCCAGACUGCUUGGUUGCACUUCGCAGUGCGCCACGCCGCCAGCAGCUCUCUGG----
((((((((((.((((------((...))))))((((((((..(((....)))..)))))))).)))))((.((((.(((((....))))))))).)).)))))(((....))).---- ( -38.70, z-score =  -1.11, R)
>droVir3.scaffold_13050 1975290 107 + 3426691
CUAGGUACUCCGCUGCAAUAGUUCAUGAUGAUGAUUCCGUUGUCCAUUAUGUUGACAGGGGCGAGGUGACUCGGCUGCGGUUGACAAUGAGCCAUGGAGACCUUGCG-----------
..((((.(((((.((.....((((((((..(((....)))..)).....(((..((.(.((((((....))).))).).))..))))))))))))))))))))....----------- ( -38.90, z-score =  -2.11, R)
>droMoj3.scaffold_6473 11515922 112 + 16943266
GUAGCUGCUCCGUCG------UUGAUGAUGAUUACUCCAUCGUCGACUAUGGUUAGAGGUUCGAGGUGGCUGGGCCGAGUUGAACAAUGUGCGGUGUCACCUGAGUGUAGCUGUUGAG
.(((((((.((((.(------(((((((((.......)))))))))).)))).......(((.(((((((...((((.(((....)))...)))))))))))))).)))))))..... ( -42.50, z-score =  -2.62, R)
>consensus
CUAGCUGCUCCGUCG______UUGAUGAUGAUGAUUCCAUCGUCCACUAUGGUAACAGGGUCGAGGUGGCUCGGCUGCGCUUAACAAUGAGCCAUGCCGCCAGAGCGU__CUG_____
..(((((((.((((............(((((((....)))))))(((....)))....)).)).))))))).(((.(((((....))))))))......................... (-16.58 = -15.60 +  -0.98)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:51:27 2011