| Sequence ID | dm3.chr3LHet |
|---|---|
| Location | 1,653,551 – 1,653,610 |
| Length | 59 |
| Max. P | 0.991946 |
| Location | 1,653,551 – 1,653,610 |
|---|---|
| Length | 59 |
| Sequences | 3 |
| Columns | 59 |
| Reading direction | reverse |
| Mean pairwise identity | 89.83 |
| Shannon entropy | 0.14008 |
| G+C content | 0.33898 |
| Mean single sequence MFE | -9.96 |
| Consensus MFE | -9.42 |
| Energy contribution | -9.87 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.57 |
| Structure conservation index | 0.95 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.51 |
| SVM RNA-class probability | 0.991946 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3LHet 1653551 59 - 2555491 UUAAACUAAACAUUUUAGCACGGGCAAAGCUAUUCUAUCCUUCUCAAUCAGCUUUGACU ......................(((((((((..................))))))).)) ( -6.27, z-score = -0.50, R) >droSim1.chr3h_random 501057 59 + 1452968 UUAAACUAAAUAUUUUACAACGGACGAAGCUAUUCUAUUCUCCUAGAUCAGCUUUGACU ........................(((((((..((((......))))..)))))))... ( -11.80, z-score = -3.59, R) >droSec1.super_159 12543 59 - 59571 UUAAACUAAAUAUUUUACAACGGACGAAGCUAUUCUAUCCUCCUAGAUCAGCUUUGACU ........................(((((((..((((......))))..)))))))... ( -11.80, z-score = -3.61, R) >consensus UUAAACUAAAUAUUUUACAACGGACGAAGCUAUUCUAUCCUCCUAGAUCAGCUUUGACU ........................(((((((..((((......))))..)))))))... ( -9.42 = -9.87 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:51:24 2011