| Sequence ID | dm3.chr3LHet |
|---|---|
| Location | 1,651,739 – 1,651,845 |
| Length | 106 |
| Max. P | 0.536102 |
| Location | 1,651,739 – 1,651,845 |
|---|---|
| Length | 106 |
| Sequences | 3 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 54.72 |
| Shannon entropy | 0.64724 |
| G+C content | 0.45156 |
| Mean single sequence MFE | -26.70 |
| Consensus MFE | -11.50 |
| Energy contribution | -12.40 |
| Covariance contribution | 0.90 |
| Combinations/Pair | 1.55 |
| Mean z-score | -0.95 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.536102 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3LHet 1651739 106 - 2555491 AUAGGCUUAUAGGCCUGUAUGAUGAGGAAACUGAAGGGUCCUUUCCUGCCUUUGGUAUCAUUACUAUGAUCGACUUUUUCUAUCUCUCUGGAAAGUACCCGAGAUU (((((((....)))))))....(.((....)).).((((.((((((......(((((....))))).(((.((.....)).))).....)))))).))))...... ( -30.20, z-score = -1.56, R) >dp4.Unknown_group_56 13141 89 - 24345 GGAGGCAGAUAGGCCUGUAUGCCGAUCGGUCCACCGUGUCUUUCCCAGGUUUUGGUAUCAGCACUAGCUUUUGCUUUUUCCAUCUUCCA----------------- (((((.((((((((......)))...(((....))))))))......((....((((..(((....)))..))))....))..))))).----------------- ( -24.30, z-score = -1.00, R) >triCas2.chrUn_47 87029 106 - 241962 AUAGGUUGAUUGGCCUAUAGUUUUGUGGAAAUGUCGGGUCCUUGCCUGGUUUUGGUAUGAGUAUGAUGUGAGCAUGUUUCCAACUUUGUGGCAAGUGUCUUAGACG (((((((....)))))))..............((((((..(((((((((..((((((((..(((...)))..))))...))))..))).))))))..)))..))). ( -25.60, z-score = -0.29, R) >consensus AUAGGCUGAUAGGCCUGUAUGAUGAUGGAACUGACGGGUCCUUCCCUGGUUUUGGUAUCAGUACUAUGUUAGACUUUUUCCAUCUUUCUGG_AAGU__C__AGA__ ((((((......)))))).((((((((.....((((((......)))))).....))))))))........................................... (-11.50 = -12.40 + 0.90)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:51:24 2011