| Sequence ID | dm3.chr3LHet |
|---|---|
| Location | 1,639,806 – 1,639,914 |
| Length | 108 |
| Max. P | 0.661540 |
| Location | 1,639,806 – 1,639,914 |
|---|---|
| Length | 108 |
| Sequences | 4 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 64.11 |
| Shannon entropy | 0.59752 |
| G+C content | 0.59314 |
| Mean single sequence MFE | -43.20 |
| Consensus MFE | -18.40 |
| Energy contribution | -20.90 |
| Covariance contribution | 2.50 |
| Combinations/Pair | 1.41 |
| Mean z-score | -1.30 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.661540 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3LHet 1639806 108 + 2555491 GGGAUUGAGGUGAAAACCCGGUCGACGGUUUCGGUGUUCGCGUAACGUAAUCCAGGCGGUCGCCUGAAGCAUGCGUGCA---------GGCGUAGUACCGUCGCGAUCAGUCAGAGC- ..(((((((((....)))..(.(((((((..(..(((..((...(((((...(((((....))))).....))))))).---------.)))..).))))))))..)))))).....- ( -39.60, z-score = -0.92, R) >droSim1.chr2R 19242337 109 - 19596830 --------AGUGAAUACCCGGUCAACUGUUUUGGAGCUCACGUUAAAUAAGCCAGGUGGUUGCCCAGAACGAUCGAAAGAACCGAUCAGACGUGGUACCAGCGCGGCCGGUCAGAGU- --------.........((((((....((.((((.((.((((((.....((((....)))).........(((((.......))))).)))))))).)))).)))))))).......- ( -33.10, z-score = -0.84, R) >droSec1.super_60 103061 117 + 163194 GGGGUUGUGGUGAACCCCCGGGCGAAUGCGGCGGAGUUUGCGUAACGUAAACCAGGUGUGUGCCCGGACCGUUUGUAGGAACCGUGCAGGCGUGGUACCAGCGCGACCGGUCAGAGC- ((((((......))))))((((((...(((.(.(.(((((((...)))))))).).))).))))))(((((.((((.((.((((((....)))))).))...)))).))))).....- ( -48.40, z-score = -0.58, R) >droYak2.chrU 26312631 117 - 28119190 GGGAUUGUGGUGUAGACCCGGUGGACUGUGUAGGAGAUCGCGUG-CUUGAACCAGGCGAUAGCCUGGUGUGUCCGUGCAAUCCAAGCAGGCGUAGUACCGGCGCCACCAGUCCGAACC .(((((((((((.....((((((..((((...(((...((((..-(....(((((((....)))))))..)..))))...)))..))))......))))))))))).))))))..... ( -51.70, z-score = -2.87, R) >consensus GGGAUUGUGGUGAAAACCCGGUCGACUGUGUCGGAGUUCGCGUAACGUAAACCAGGCGGUUGCCCGGAGCGUUCGUACAAACCGAGCAGGCGUAGUACCAGCGCGACCAGUCAGAGC_ .................((((((....(((((((...((((((........((((((....)))))).((......))...........))))))..)))))))))))))........ (-18.40 = -20.90 + 2.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:51:23 2011