| Sequence ID | dm3.chr2L |
|---|---|
| Location | 3,967,464 – 3,967,562 |
| Length | 98 |
| Max. P | 0.969743 |
| Location | 3,967,464 – 3,967,562 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 82.65 |
| Shannon entropy | 0.31941 |
| G+C content | 0.40274 |
| Mean single sequence MFE | -17.98 |
| Consensus MFE | -14.98 |
| Energy contribution | -14.58 |
| Covariance contribution | -0.40 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.82 |
| SVM RNA-class probability | 0.969743 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 3967464 98 - 23011544 AAAAGAAAGGAAAAAUGUAGUAAAACCUGGAAAAAUGCGGGAAAACUGGAGGGGAAAACAAAAGCAGCAUCGAUUGACAUUGCAGUGAAUGUUGCAAC ...............(.((((....((((........))))...)))).).............(((((((..((((......))))..)))))))... ( -17.50, z-score = -1.71, R) >droSim1.chr2L 3926040 97 - 22036055 AAAAGAAAGGAAAAAUGUAGUAGAACCUGGAAAAAUGCGGGAAAACUG-GGGGGAAAACAAAAGCAGCAUCGAUUGACAUUGCAGUGAAUGUUGCAAC ...............(.((((....((((........))))...))))-.)............(((((((..((((......))))..)))))))... ( -17.50, z-score = -1.63, R) >droSec1.super_5 2070402 98 - 5866729 AAAAGAAAGGAAAAAUGUAGUAAAACCUGGAAAAAUGCGGGAAAACUGGGGGGGAAAACAAAAGCAGCAUCGAUUGACAUUGCAGUGAAUGUUGCAAC ...............(.((((....((((........))))...)))).).............(((((((..((((......))))..)))))))... ( -17.50, z-score = -1.58, R) >droEre2.scaffold_4929 4025652 91 - 26641161 AAAAAAGGGGAAAAAUGUAGUAAAACCUGG-AAAAUGCGGG-AAGCUGAGGGGGGAAACAAAAGCAGCAUCGAUUGA-----CAGUGAGUGUUGCAAC ...............(((((((....(((.-..(((.(((.-..((((.....(....).....)))).))))))..-----)))....))))))).. ( -17.30, z-score = -1.76, R) >droAna3.scaffold_12943 514433 88 + 5039921 ------AAAAAAAAAUAUA----UACCGAGGAGAACCUGGAAAAAUUGUGGGGGAAAACAAGAGCAGCAUCGAUUGACAUUGCAAUGAAUGCUGCAAC ------.............----..((.(((....))))).....((((........))))..(((((((..((((......))))..)))))))... ( -20.10, z-score = -3.26, R) >consensus AAAAGAAAGGAAAAAUGUAGUAAAACCUGGAAAAAUGCGGGAAAACUGGGGGGGAAAACAAAAGCAGCAUCGAUUGACAUUGCAGUGAAUGUUGCAAC .........................((((........))))......................(((((((..((((......))))..)))))))... (-14.98 = -14.58 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:15:04 2011