| Sequence ID | dm3.chr3LHet |
|---|---|
| Location | 1,522,255 – 1,522,349 |
| Length | 94 |
| Max. P | 0.618628 |
| Location | 1,522,255 – 1,522,349 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 69.47 |
| Shannon entropy | 0.50470 |
| G+C content | 0.45155 |
| Mean single sequence MFE | -24.18 |
| Consensus MFE | -12.34 |
| Energy contribution | -11.78 |
| Covariance contribution | -0.56 |
| Combinations/Pair | 1.55 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.618628 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3LHet 1522255 94 + 2555491 AAAGAAGGUAGUUCAAAAUGUCAUCCAG---------------GCAACGCAAGGCCACGAGGCUUGAAACAGGAG--GUUGAAAUGUUUGGGUCUGGCCAACAGACUAAGA .............((((...(((.((.(---------------....)...(((((....))))).........)--).)))....))))((((((.....)))))).... ( -22.80, z-score = -0.21, R) >droSim1.chr3h_random 1164746 94 - 1452968 GGAGAAGAUAGUUCAAAAUGUCAUCGAG---------------GAAACGCAAGGCCACGAGGCUUGAAUUAGGAG--GUUGAAAUGUUUGAGUCUGGCCAUCAGACUCCGA ((((..((((........))))...(((---------------....)....(((((...((((..(((......--........)))..))))))))).))...)))).. ( -26.34, z-score = -1.25, R) >droSec1.super_102 35748 94 - 145419 GGAGAAGAUAGUUCAAAAUGUCAUCGAG---------------GAAACGCAAGGCCACGAGGCUUGAAUUAGGAG--GUUGAAAUGUUUGAGUCUGGCCAUCAGACUCCGA ((((..((((........))))...(((---------------....)....(((((...((((..(((......--........)))..))))))))).))...)))).. ( -26.34, z-score = -1.25, R) >droYak2.chr3h_random 70274 105 - 911842 UUAAAAGACAUCUGAAAAUGUCUUUAAACUAGAAAGAAAGCGAGAAAAACAAGGCCACGAUACAAGAGGCACAGGAGAGUGAAAUGAUUGAGUCUGGCCAUUAGA------ ...((((((((......))))))))...........................(((((.(((.(((..(.(((......)))...)..))).))))))))......------ ( -23.70, z-score = -2.92, R) >droEre2.scaffold_4929 23934028 91 + 26641161 UAAGGCGACAGUUCAAAAUGUCGUCAAG---------------GAAACGCAAGGCUACGAUCCAGGGCACAGGCACAGUUGAAAUGGUUGAAUCUGGCUAUUAGAC----- ...(((((((........)))))))..(---------------....)((...(((.(......))))....))...(((..(((((((......))))))).)))----- ( -21.70, z-score = -0.98, R) >consensus GAAGAAGAUAGUUCAAAAUGUCAUCAAG_______________GAAACGCAAGGCCACGAGGCUUGAAACAGGAG__GUUGAAAUGUUUGAGUCUGGCCAUCAGACU__GA ...((.((((........)))).))...........................(((((...((((((((.(((......))).....)))))))))))))............ (-12.34 = -11.78 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:51:19 2011