| Sequence ID | dm3.chr3LHet |
|---|---|
| Location | 1,398,299 – 1,398,391 |
| Length | 92 |
| Max. P | 0.620658 |
| Location | 1,398,299 – 1,398,391 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 74.29 |
| Shannon entropy | 0.42582 |
| G+C content | 0.35272 |
| Mean single sequence MFE | -17.82 |
| Consensus MFE | -8.68 |
| Energy contribution | -10.18 |
| Covariance contribution | 1.50 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.620658 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3LHet 1398299 92 - 2555491 CUAAUCCAAUCAACCUCAGCCAGAAGCUUUUG--AUUCGAACUUUUUGAACUUUCAGUAAUGUUAAGGAUCAAAGCUUUAUGCUGAAGUUAUUU ...........(((.(((((..((((((((.(--((((.(((...((((....))))....)))..)))))))))))))..))))).))).... ( -24.40, z-score = -3.45, R) >droSim1.chrU 10276834 82 - 15797150 CUAAUCCAAUCAACCUCGGCCAGAAGCUUUUCUUUCGGAAAAUUACCGAACUUUC------------GAUAAAAGCUUUAUGCUGGAAAUUUUU ...............(((((..(((((((((...((((((...........))))------------)).)))))))))..)))))........ ( -17.60, z-score = -1.99, R) >droSec1.super_66 85357 92 - 176163 CUAAUCCAAUCAACCUCGGACAGAAGCUUUUC--AUACGAACUUUUUGAACUUUCAGUUAUGUUUAGGAUAAAAGCUUUAUGCUAAAGUUAUUU ...........(((.(..(.(((((((((((.--....((((...((((....))))....)))).....))))))))).)))..).))).... ( -12.90, z-score = -0.00, R) >droYak2.chrU 25745587 84 + 28119190 CUGAUCCAAUCAACCUCGGCCAGAAGCUUUUC-UUUGCAAACUUCUUGAACUUUCACUUAUGUUUAGAAUAAAAGCUUGAUGCCG--------- ................((((...((((((((.-(((..((((....(((....))).....)))).))).))))))))...))))--------- ( -16.40, z-score = -1.77, R) >consensus CUAAUCCAAUCAACCUCGGCCAGAAGCUUUUC__AUGCAAACUUUUUGAACUUUCAGUUAUGUUUAGGAUAAAAGCUUUAUGCUGAAGUUAUUU ...............(((((..(((((((((..............((((....)))).............)))))))))..)))))........ ( -8.68 = -10.18 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:51:17 2011