| Sequence ID | dm3.chr3LHet |
|---|---|
| Location | 1,354,720 – 1,354,778 |
| Length | 58 |
| Max. P | 0.950394 |
| Location | 1,354,720 – 1,354,778 |
|---|---|
| Length | 58 |
| Sequences | 4 |
| Columns | 58 |
| Reading direction | reverse |
| Mean pairwise identity | 76.44 |
| Shannon entropy | 0.37247 |
| G+C content | 0.43966 |
| Mean single sequence MFE | -16.05 |
| Consensus MFE | -11.89 |
| Energy contribution | -10.58 |
| Covariance contribution | -1.31 |
| Combinations/Pair | 1.69 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.56 |
| SVM RNA-class probability | 0.950394 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3LHet 1354720 58 - 2555491 AAUGGACCAGCUCUCCUUGUAGCUUUGUAUCUGUUUACCAUGUGGGUAGAGCUGAACU .......(((((((.((..((.....(((......)))..))..)).))))))).... ( -16.00, z-score = -1.31, R) >droSim1.chr2h_random 2436654 58 + 3178526 GAUGGUCCAGCUCUCCUUGCAGCUUUAUACCUGUCUACCAUGCAGGUAAAGCUGUAAU ((.((.....)).)).(((((((((..(((((((.......)))))))))))))))). ( -19.20, z-score = -3.01, R) >droSec1.super_48 152189 58 - 230265 GAUGGUCCAGCUCUCCUUGCAGCUUUAUACCUGUCUACCAUGCAGGUAAAGCUGAAAU ((.((.....)).))....((((((..(((((((.......))))))))))))).... ( -15.90, z-score = -1.72, R) >droYak2.chrU 19665134 58 + 28119190 AAUUAUUUAACUCUGCUUGCAGUUUUGUAUCCGUUGAUCAUGCGGAUGGAGGUUAACU ......(((((((((....)))...(.(((((((.......))))))).))))))).. ( -13.10, z-score = -1.45, R) >consensus AAUGGUCCAGCUCUCCUUGCAGCUUUAUACCUGUCUACCAUGCAGGUAAAGCUGAAAU ...................((((((..(((((((.......))))))))))))).... (-11.89 = -10.58 + -1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:51:16 2011