| Sequence ID | dm3.chr3LHet |
|---|---|
| Location | 1,343,313 – 1,343,421 |
| Length | 108 |
| Max. P | 0.627285 |
| Location | 1,343,313 – 1,343,421 |
|---|---|
| Length | 108 |
| Sequences | 4 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 68.63 |
| Shannon entropy | 0.50168 |
| G+C content | 0.34912 |
| Mean single sequence MFE | -23.55 |
| Consensus MFE | -10.79 |
| Energy contribution | -10.60 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.47 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.627285 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3LHet 1343313 108 - 2555491 --CCUGUGCUAUGUUCCUCUCUCUCAAUAGAGAGCGAGCACAACUGCUUAAAUCUUUAUUUUG-------UGCUCAUUUGCCUUCUGCUUAGCAAAGUCAGUUAAAAAUUAUGUGUU --.((.(((((.((..((((((......)))))).((((((((.................)))-------)))))...........)).))))).)).................... ( -23.53, z-score = -1.40, R) >dp4.Unknown_group_7 109082 110 - 144021 CGUAUGGAAUAUAUUAAACUUUUAAAUUAGAAAGUGGGCGAACCUCCUUAAAUCGCAUUUCAA-------AGUUUUUUAUCCUUCAACUUUUCCAGUUUUCUUGAAAUAUUAAUGUU .((.((((..(((..(((((((.((((..(((((..((....))..)))...))..)))).))-------)))))..)))..)))))).((((.((....)).)))).......... ( -15.10, z-score = -0.09, R) >droSec1.super_95 18202 117 + 111558 CCUUUAUGAUAUGUUCCUCUCUCUCAAUAGAGAGCGAGCACAGCUGUUUUAAUCUUUAUUCUGUGCAACUUGCUCAUUUGCCUUCUGCAUAGCAAGUUCAGUUACAAAUUAAGUGUU ......((((.(((..(((.(((((....))))).))((((((..((..........)).))))))((((((((....(((.....))).))))))))..)..))).))))...... ( -28.40, z-score = -2.07, R) >droSim1.chr2h_random 2916067 117 + 3178526 CCUUUAUGCUAUGUUCCUCUCUCUCAAUAGAGAGCGAGCACAGCUGUUUUAAUCUUUAUUCUGUAAAACUUGCUUAUUUGCCUUCUCCAUAGCAAGGUCAGUUACAAAUUAAAUGUU .......(((.(((((((((((......)))))).))))).)))......(((.((((...(((((..((((((................)))))).....)))))...)))).))) ( -27.19, z-score = -2.73, R) >consensus CCUUUAUGAUAUGUUCCUCUCUCUCAAUAGAGAGCGAGCACAGCUGCUUAAAUCUUUAUUCUG_______UGCUCAUUUGCCUUCUGCAUAGCAAGGUCAGUUAAAAAUUAAAUGUU ......((((((((....(((((......))))).((((................................))))...........))))))))....................... (-10.79 = -10.60 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:51:16 2011