Locus 5583

Sequence ID dm3.chr3LHet
Location 1,315,179 – 1,315,283
Length 104
Max. P 0.586034
window7670

overview

Window 0

Location 1,315,179 – 1,315,283
Length 104
Sequences 3
Columns 105
Reading direction forward
Mean pairwise identity 84.05
Shannon entropy 0.20990
G+C content 0.50412
Mean single sequence MFE -26.91
Consensus MFE -24.00
Energy contribution -23.78
Covariance contribution -0.22
Combinations/Pair 1.05
Mean z-score -1.13
Structure conservation index 0.89
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.19
SVM RNA-class probability 0.586034
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3LHet 1315179 104 + 2555491
CUAUAGGCCCAUAAAACUCUAUCCCCAGGCUCUCGAUAAGCGUAAACAAUCGGAGUGUCCUUGCCUGGGGCCAAUUCAGGAGUACGUU-UUCGAGCUCCAACUAA
...(((................((((((((....((((..((........))...))))...))))))))........(((((.((..-..)).)))))..))). ( -31.10, z-score =  -2.05, R)
>droSim1.chrU 13443535 91 - 15797150
CUAUAGGCCCAUAAAACUCUAUCCACAGGCUAUCGAUAAGUGC--------------CCCUUGCCUGGGGUCAAUUCAGGAGUACGUUGUCCGAGCUCCAUCUGA
.....((((((((......)))...(((((.............--------------.....))))))))))......(((((.((.....)).)))))...... ( -23.47, z-score =  -0.25, R)
>droSec1.super_48 113846 91 + 230265
CUAUAGGCCCAUAAAACUCUAUCCCCAGGCUAUCGAUAAGUGC--------------CCCUUGCCUGGGGUCAAUUCAGGAGUACGUUGUCCGAGCUCCAUCUGA
...((((...............((((((((.............--------------.....))))))))........(((((.((.....)).))))).)))). ( -26.17, z-score =  -1.09, R)
>consensus
CUAUAGGCCCAUAAAACUCUAUCCCCAGGCUAUCGAUAAGUGC______________CCCUUGCCUGGGGUCAAUUCAGGAGUACGUUGUCCGAGCUCCAUCUGA
.....((((((((......)))...(((((................................))))))))))......(((((.((.....)).)))))...... (-24.00 = -23.78 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:51:15 2011