| Sequence ID | dm3.chr3LHet |
|---|---|
| Location | 1,184,870 – 1,184,923 |
| Length | 53 |
| Max. P | 0.977891 |
| Location | 1,184,870 – 1,184,923 |
|---|---|
| Length | 53 |
| Sequences | 7 |
| Columns | 56 |
| Reading direction | forward |
| Mean pairwise identity | 67.64 |
| Shannon entropy | 0.63934 |
| G+C content | 0.42125 |
| Mean single sequence MFE | -11.10 |
| Consensus MFE | -7.45 |
| Energy contribution | -7.33 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.78 |
| Mean z-score | -1.03 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.98 |
| SVM RNA-class probability | 0.977891 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3LHet 1184870 53 + 2555491 AAGGCAGUUUAUAAAGUUCGGGAUCCA---CAAAUCCUGAGCACGCCGUCGUUGAA ..(((.((.......(((((((((...---...))))))))))))))......... ( -14.91, z-score = -1.99, R) >droWil1.scaffold_181148 3667496 56 - 5435427 CAAUUAAUUCAAAUCUAAAGGAACCCGGUUCUUGCCCUCUUCACAACAUAGUGGAA ..................((((((...))))))......(((((......))))). ( -6.60, z-score = 0.31, R) >droPer1.super_0 66743 53 - 11822988 AAGGAAGUUUAUAUAGCUUGGGAUCAA---AAAAUCCUGAGCACGCCGACGAAGAA ...............(((..((((...---...))))..))).............. ( -12.50, z-score = -1.94, R) >dp4.Unknown_singleton_2191 15506 53 + 19051 AAGGAAGUUUAUAUAGCUUGGGAUCAA---AAAAUCCUGAGCACGCCGACGAAGAA ...............(((..((((...---...))))..))).............. ( -12.50, z-score = -1.94, R) >droSim1.chrU 10363598 52 - 15797150 AAGGCAGUUUAUAUAGCUUGGGAUCAA---UGAAUCCUGAGCACGCCAGCGUAGA- ..(((.((....)).(((..((((...---...))))..)))..)))........- ( -15.60, z-score = -2.01, R) >droSec1.super_60 66818 53 - 163194 AAGGAAGUUUAUAUAGCAUGGGAUCAA---AGAAUCCUGAGAACGCCGUCGUUGAA .............(((((((((.((..---((....))..)).).)))).)))).. ( -6.90, z-score = 0.71, R) >droYak2.chrU 7338653 53 + 28119190 AAAGAAGUAAUUAUAGCUUGAGAUCUU---UUAAUCACAAGCGCGCCGACGAUGUU ......((.......(((((.(((...---...))).)))))......))...... ( -8.72, z-score = -0.39, R) >consensus AAGGAAGUUUAUAUAGCUUGGGAUCAA___AAAAUCCUGAGCACGCCGACGUAGAA ...............(((((((((.........))))))))).............. ( -7.45 = -7.33 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:51:11 2011