| Sequence ID | dm3.chr3LHet |
|---|---|
| Location | 1,134,771 – 1,134,875 |
| Length | 104 |
| Max. P | 0.762879 |
| Location | 1,134,771 – 1,134,875 |
|---|---|
| Length | 104 |
| Sequences | 3 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 72.26 |
| Shannon entropy | 0.39165 |
| G+C content | 0.51515 |
| Mean single sequence MFE | -29.90 |
| Consensus MFE | -20.66 |
| Energy contribution | -21.00 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.62 |
| SVM RNA-class probability | 0.762879 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3LHet 1134771 104 - 2555491 UCAUACCACGUGUGGGAAACGGUGCGAGAGAGCUGUCAGCCUAGCAACGAGAGAGACAAUGCUUCUCUCUCUCAGACCGAUCACACUGAUGAGCAGUAAGAAAU ((((..((.((((((....((((((...((.((.....)))).))...((((((((.......))))))))....)))).))))))))))))............ ( -30.80, z-score = -0.96, R) >droSec1.super_67 21558 102 + 170185 UUAUCCCCAGUGUGGGAACCGGUGCGAGAGAGCUGUCAUCCAAGCAACGAGAGAGGCAAUGGU--ACUCUCUCAGACCAAUCACACUGAUGGGCAAUAAGAAAU ....(((((((((((.....(((..(((((((.(..(((....((..(....)..)).)))..--))))))))..)))..))))))))..)))........... ( -34.40, z-score = -2.44, R) >droYak2.chrU 22757478 88 + 28119190 ----------UGUGGGAACCCGUGCGAGAGAGCGGCCAGCCAAGCAGUGAGAGAGACCAUU----GCUCUCUCAGG--AAAGCCGAUGAUGAGUAGUAUGAACU ----------...((....))((((((((((((((....))....((((........))))----)))))))).((--....))...........))))..... ( -24.50, z-score = -0.84, R) >consensus U_AU_CC__GUGUGGGAACCGGUGCGAGAGAGCUGUCAGCCAAGCAACGAGAGAGACAAUG_U__ACUCUCUCAGACCAAUCACACUGAUGAGCAGUAAGAAAU .........(((((((...((((.(....).))))....)).......(((((((...........)))))))........))))).................. (-20.66 = -21.00 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:51:10 2011