| Sequence ID | dm3.chr3LHet |
|---|---|
| Location | 1,134,344 – 1,134,450 |
| Length | 106 |
| Max. P | 0.528494 |
| Location | 1,134,344 – 1,134,450 |
|---|---|
| Length | 106 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 70.74 |
| Shannon entropy | 0.51930 |
| G+C content | 0.34192 |
| Mean single sequence MFE | -18.46 |
| Consensus MFE | -8.53 |
| Energy contribution | -8.69 |
| Covariance contribution | 0.16 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.528494 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3LHet 1134344 106 - 2555491 UCUUCAAAUUCUAAUUCCUAAUCCAA-UCAACCUCGGCCAGAAGCUUUUCUUU-GAAAACUUUCUGAACUUUC------------GAUAAAAGCUUUAUGCUGAAGUUAUUCCACUGCAU ..........................-..(((.(((((..(((((((((..((-((((...........))))------------)).)))))))))..))))).)))............ ( -19.60, z-score = -2.53, R) >droAna3.scaffold_13079 481093 119 - 742402 CUUCUUAAAUCUAAAUUCUCCUCCAAUUCAACCUCGGCCAGAAGCUUUUCUUUUUUAAGCUUCCAGAACUUUUCUUUUUGUUUUUAAUAAAAGC-UUAUGCUGAAACUGUCGCAUCUCAU .................................(((((...((((((((...((..((((....(((.....)))....))))..)).))))))-))..)))))................ ( -16.30, z-score = -1.10, R) >droYak2.chrU 27970839 113 + 28119190 CUUCUGGAUUCUAAUUCCUGAUCCCA-UCAAACUCGACCAGAAGCUUUUCUUU-UGAAACUUCUAGAACAUUA-----UGUUUAGAAUAAAAGCAUGAUGCCGAAAUUAUUUCUCUGCGU ....(((..((........))..)))-......(((...(((((..((((...-.)))))))))....(((((-----(((((.......)))))))))).)))................ ( -19.20, z-score = -0.75, R) >droSim1.chrU 8784836 107 - 15797150 UCUUCAAAUUCUAACUCCUAAUCCAA-UCAACCUCGGCCAGAAGCUUUUCUUUCGGAAAAUUACCGAACUUUC------------GAUAAAAGCUUUAUGCUGGAAAUUUUCCACUGCAU ..........................-......(((((..(((((((((...((((((...........))))------------)).)))))))))..)))))................ ( -17.60, z-score = -1.43, R) >droSec1.super_54 151324 118 - 216317 UGUUCUAAUUCUUAAUCCUGAUCCAA-UCAUCCUCGGUCAGAAGCUUUUUAUU-AGAAACUUUUUGAAAUUUCAAUUACGUUUAGGAUAAAAGCUUUAUACUGAAAUUAUUACUCUGUGC .((..(((((........((((...)-)))...(((((..(((((((((.(((-..(((((..((((....))))..).))))..))))))))))))..))))))))))..))....... ( -19.60, z-score = -1.10, R) >consensus UCUUCAAAUUCUAAAUCCUAAUCCAA_UCAACCUCGGCCAGAAGCUUUUCUUU_GGAAACUUCCAGAACUUUC______GUUU__GAUAAAAGCUUUAUGCUGAAAUUAUUCCACUGCAU .................................(((((..(((((((((.......................................)))))))))..)))))................ ( -8.53 = -8.69 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:51:09 2011