Locus 5578

Sequence ID dm3.chr3LHet
Location 1,091,621 – 1,091,675
Length 54
Max. P 0.986873
window7662

overview

Window 2

Location 1,091,621 – 1,091,675
Length 54
Sequences 3
Columns 60
Reading direction forward
Mean pairwise identity 74.44
Shannon entropy 0.36585
G+C content 0.47654
Mean single sequence MFE -14.60
Consensus MFE -14.16
Energy contribution -13.50
Covariance contribution -0.66
Combinations/Pair 1.23
Mean z-score -1.82
Structure conservation index 0.97
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 2.26
SVM RNA-class probability 0.986873
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3LHet 1091621 54 + 2555491
AACGGCACGACGACGACAAUUCGGACUCUCGAUUGAUUUCGAAUUGACCAAUUC------
...((..((....)).(((((((((.((......)).))))))))).)).....------ ( -12.60, z-score =  -1.70, R)
>droYak2.chrU 13313472 60 - 28119190
AACGGCACGCCGACAACAAUUCGGACUCGCGUUUGACUCCGGGUUGAUAAACAAAGAUCG
..(((....)))....(((((((((.(((....))).))))))))).............. ( -16.90, z-score =  -1.71, R)
>droEre2.scaffold_4929 3743129 60 - 26641161
AACGGUACGACGACAACAAUUCGGACUCGCGAUUGACUCCGGAUUGAUUUAAAACAAUCG
..((......))....(((((((((.(((....))).))))))))).............. ( -14.30, z-score =  -2.05, R)
>consensus
AACGGCACGACGACAACAAUUCGGACUCGCGAUUGACUCCGGAUUGAUAAAAAA__AUCG
..((......))....(((((((((.((......)).))))))))).............. (-14.16 = -13.50 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:51:08 2011