| Sequence ID | dm3.chr3LHet |
|---|---|
| Location | 1,083,961 – 1,084,016 |
| Length | 55 |
| Max. P | 0.648233 |
| Location | 1,083,961 – 1,084,016 |
|---|---|
| Length | 55 |
| Sequences | 3 |
| Columns | 64 |
| Reading direction | reverse |
| Mean pairwise identity | 49.73 |
| Shannon entropy | 0.68596 |
| G+C content | 0.41945 |
| Mean single sequence MFE | -10.83 |
| Consensus MFE | -3.46 |
| Energy contribution | -4.47 |
| Covariance contribution | 1.01 |
| Combinations/Pair | 1.64 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.32 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.648233 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3LHet 1083961 55 - 2555491 GCGAACGCGAGUUUACAAUAUUCUCCGCCUCAAUCAGGAAACUCUCC-AAUACAUG-------- (..(((....)))..)....................(((.....)))-........-------- ( -7.30, z-score = -1.05, R) >droEre2.scaffold_4784 24570201 64 - 25762168 GAGGUCGACUAUUUAUUAUAUUUUCAGCCUCAAUAAGUAAGCUUUCCUAGCGUUUCAACAUGUG (((((.((..((.......))..)).))))).........(((.....)))............. ( -10.30, z-score = -1.27, R) >droPer1.super_91 137131 54 - 241190 GGGGUCGGGAAUUUAGCAUAUUUUCUAUCUUUGCUAGUGCUGUUCUC-AGCACUG--------- (((((.(..(((.......)))..).)))))...((((((((....)-)))))))--------- ( -14.90, z-score = -2.35, R) >consensus GAGGUCGAGAAUUUACAAUAUUUUCAGCCUCAAUAAGUAAACUUUCC_AGCACUU_________ (((((.((((((.......)))))).)))))................................. ( -3.46 = -4.47 + 1.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:51:07 2011