| Sequence ID | dm3.chr3LHet |
|---|---|
| Location | 1,069,988 – 1,070,118 |
| Length | 130 |
| Max. P | 0.534380 |
| Location | 1,069,988 – 1,070,118 |
|---|---|
| Length | 130 |
| Sequences | 4 |
| Columns | 133 |
| Reading direction | reverse |
| Mean pairwise identity | 57.16 |
| Shannon entropy | 0.71718 |
| G+C content | 0.47685 |
| Mean single sequence MFE | -44.08 |
| Consensus MFE | -8.68 |
| Energy contribution | -9.37 |
| Covariance contribution | 0.69 |
| Combinations/Pair | 1.67 |
| Mean z-score | -2.10 |
| Structure conservation index | 0.20 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.534380 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3LHet 1069988 130 - 2555491 GGGGUUGCCACCAAGGGGGUGUCUUCUCGCCUCUCUUUUGGAUCUUGCUGGUAGACGAGCUGCUGGACAGACUGACCCGCAGAGGUAUACUUUGCCAAGGCUAUGCUGACGAU---AUAGUCAUUAUAGCUAG .(((((....(((((((((((......)))))))...)))).(((..(..((((.....))))..)..)))..)))))((((((.....))))))...(((((((.((((...---...)))).))))))).. ( -49.60, z-score = -2.07, R) >droWil1.scaffold_180026 1262 131 - 3204 --GGAUGCCCCCAAGGGGGAGUCUUGUCACCACUUUUGUGGAAUCUCGUAGCAGAUACGCUAUUGAGGCAACUCAAUAAUUGCGGUUUUCCAACUUAUGGAUUUGCCGACGACUAUCUAGCUCUGAUAGUUGG --((((.((((....)))).)))).....((((....)))).....((((.....)))).(((((((....)))))))....((((..((((.....))))...)))).((((((((.......)))))))). ( -48.10, z-score = -3.79, R) >droGri2.scaffold_14351 553 129 + 12739 AAGGCUGUCCCCAAGGAGG-GUGUUGUCUCCGCUACUCUGGAGUUUAUUAGUAGACAAACUACUAAACAGACUUGCUAACAGUGGUAUUCAAUGUCAAGGUUAUGCCGAUGAC---AUUAUUAUCAUAGCGCG .((((.(..(((.....))-)..).)))).(((.......((((((.(((((((.....)))))))..))))))(((....((((((...(((((((.((.....))..))))---)))..)))))))))))) ( -36.90, z-score = -1.51, R) >triCas2.chrUn_85 51318 130 - 151068 AGGGUAGCCCUCAGGGGCGAAUUCUCUCUCCACUCUUGUGAGACCUUAUGGUGGACGAUUUCAUUCGCAAGCUAAAUGUGCUUGGUGUGUAUUGUUAGGGCUAUGUCGAUGAC---AUAGUCAUCCUGAUGCA .(((...)))((((((((((((....(((((.(((....)))(((....)))))).))....))))))...((((..((((.......))))..))))(((((((((...)))---)))))).)))))).... ( -41.70, z-score = -1.01, R) >consensus AGGGUUGCCCCCAAGGGGGAGUCUUCUCUCCACUCUUGUGGAACCUAAUAGUAGACAAGCUACUGAACAAACUAAAUAACAGUGGUAUUCAAUGUCAAGGCUAUGCCGACGAC___AUAGUCAUCAUAGCGCG ..(((.(((.(((.(((((.............))))).)))......(((((((.....)))))))................................)))...)))((((((......))))))........ ( -8.68 = -9.37 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:51:06 2011