| Sequence ID | dm3.chr3LHet |
|---|---|
| Location | 1,040,986 – 1,041,049 |
| Length | 63 |
| Max. P | 0.910425 |
| Location | 1,040,986 – 1,041,049 |
|---|---|
| Length | 63 |
| Sequences | 6 |
| Columns | 63 |
| Reading direction | reverse |
| Mean pairwise identity | 79.05 |
| Shannon entropy | 0.40503 |
| G+C content | 0.44013 |
| Mean single sequence MFE | -12.63 |
| Consensus MFE | -8.20 |
| Energy contribution | -8.90 |
| Covariance contribution | 0.70 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.21 |
| SVM RNA-class probability | 0.910425 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3LHet 1040986 63 - 2555491 CGGCCUUCCUGACAUGAUACACGUCCUCGUGUGUUGUCUUAAAUCUACCACAUAAGUGAUAAU ..........((((..(((((((....)))))))))))..........(((....)))..... ( -12.90, z-score = -1.50, R) >droSim1.chrU 9456806 63 + 15797150 CUGCCUUUCUGACAUAAUACACGUUCUCGUGUGUUGUCUCAAAUCUACCACAUAAGGGACAAU .(((((((.(((.((((((((((....)))))))))).)))............))))).)).. ( -15.12, z-score = -2.62, R) >droSec1.super_60 11079 63 + 163194 CUGCCUUUCUGGCAUAAUACACGUCCUCGUGUGUUGUCUCAAAUCUACCUCAUAAGGGACAAU .((((.....)))).((((((((....))))))))(((((...............)))))... ( -18.36, z-score = -4.02, R) >droYak2.chrU 19814747 62 + 28119190 CGACCCUCCUGACAUAAUACACUUCCUCGUGCGCUGUCUUAAAUCUA-AACAUAAGUGACAAU ..........((((.....(((......)))...)))).........-............... ( -4.20, z-score = 0.19, R) >droAna3.scaffold_13099 1010929 61 - 3324263 CGGCCUUCCUGACAACUCACACGUCCUCGUGUGUUUAGUU--UUCAAUACCACGAGACUCAAU .((......(((.((((((((((....))))))...))))--.)))...))............ ( -11.90, z-score = -1.18, R) >droWil1.scaffold_181154 1830138 63 - 4610121 CGGCCUUCCUGACAAUAUACACGUCCUCGUGUGUUGUCUUAACUCAACCACAUAAGUGACAAC ..........((((((((((........))))))))))..........(((....)))..... ( -13.30, z-score = -1.59, R) >consensus CGGCCUUCCUGACAUAAUACACGUCCUCGUGUGUUGUCUUAAAUCUACCACAUAAGUGACAAU .........(((.((((((((((....)))))))))).)))...................... ( -8.20 = -8.90 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:51:04 2011