| Sequence ID | dm3.chr3LHet |
|---|---|
| Location | 1,033,974 – 1,034,074 |
| Length | 100 |
| Max. P | 0.753653 |
| Location | 1,033,974 – 1,034,074 |
|---|---|
| Length | 100 |
| Sequences | 3 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 57.00 |
| Shannon entropy | 0.61513 |
| G+C content | 0.47314 |
| Mean single sequence MFE | -25.10 |
| Consensus MFE | -11.69 |
| Energy contribution | -10.60 |
| Covariance contribution | -1.09 |
| Combinations/Pair | 1.55 |
| Mean z-score | -1.13 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.59 |
| SVM RNA-class probability | 0.753653 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3LHet 1033974 100 - 2555491 UCAGUCAGUAAUCUAGAAUGCUAACGGCUUAUCAAGGAACAAGUCCGAAGUGGAGCACUAUCUCAAAACAAAACAGGUGGGCACAAUGCUGGUUUCAGAG ..(..(((((...(((....)))...(((((((..(((.....)))((..(((....)))..))...........)))))))....)))))..)...... ( -19.20, z-score = 0.31, R) >droYak2.chrU 16415010 85 + 28119190 CCAGAUAGUAAUCUGGAAUGCUAAUGGCUUGGCGAGGAACAAGCCAGAAGUGG---------------CCAACCAGGUGGAUGUGAUGCUGGUCAGCGAC ((((((....))))))...(((..(((((((........)))))))..))).(---------------(..(((((............)))))..))... ( -29.20, z-score = -2.19, R) >droAna3.scaffold_13034 1925030 100 + 2223656 AGAUUUAACAGUUUGGAACGCUAACGGCCUGGUCAAAAGCAGGCCAGAAGUCGAGCUCUACUGCAAGACUAACAAAGCAGACGUUCUCCUUAUAUCAGAA .(((.(((......((((((((...((((((........))))))...((((..((......))..))))........)).))))))..))).))).... ( -26.90, z-score = -1.51, R) >consensus ACAGUUAGUAAUCUGGAAUGCUAACGGCUUGGCAAGGAACAAGCCAGAAGUGGAGC_CUA___CAA_ACAAACCAGGUGGACGUAAUGCUGGUAUCAGAA ((((......(((((....(((...((((((........))))))...))).................((.....)))))))......))))........ (-11.69 = -10.60 + -1.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:51:02 2011