| Sequence ID | dm3.chr3LHet |
|---|---|
| Location | 975,215 – 975,318 |
| Length | 103 |
| Max. P | 0.821284 |
| Location | 975,215 – 975,318 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 80.20 |
| Shannon entropy | 0.33534 |
| G+C content | 0.56329 |
| Mean single sequence MFE | -28.03 |
| Consensus MFE | -17.16 |
| Energy contribution | -18.44 |
| Covariance contribution | 1.28 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.80 |
| SVM RNA-class probability | 0.821284 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3LHet 975215 103 - 2555491 CAUUCAGCAACCACUUGGUCACUUCAGCUAUAGUCACCGAUCGUGGCCACUACCUGGUCCUGAUCCACACUCUGUACCACACCACAGCUACAGAGGCGACAAC ......((........(((.(((........))).)))(((((.(((((.....))))).)))))....(((((((.(........).)))))))))...... ( -27.10, z-score = -1.98, R) >droSim1.chr3h_random 192812 93 + 1452968 ----------CCAGUUGGUCACUUCAGCUAUAGUCACCGAUCGUGGCCACCACCUGGUCCAGAUCCGCACUCUGUACCACACCACAGCUACAGAGGCGACAAC ----------..((((((.....))))))...(((...((((.((((((.....))).))))))).((.(((((((.(........).))))))))))))... ( -30.90, z-score = -3.05, R) >droSec1.super_75 116620 103 + 156374 CAUUCAGCAACCACUUGACCACUCCAGCCAUAGUCGCCGAUCGGGGCCACCACCUGGUCCUGAUCUGCACUCUGUACCACACCACAGCUACAGAGACGUCAAC ..............(((((................((.(((((((((((.....))))))))))).)).(((((((.(........).)))))))..))))). ( -34.50, z-score = -4.11, R) >droYak2.chrU 2676782 93 - 28119190 ----------CCAAUUGGUCACCUGAGCUACAGUCACCUAUCGGGGCCACCACCUUGACCCGAUCCGCACUCAGUACCACACCAGAGCCACGGAUACGACAAC ----------.(((.((((..(((((..............)))))...))))..)))...(((((((..(((............)))...))))).))..... ( -18.44, z-score = 0.32, R) >droEre2.scaffold_4784 25245429 93 - 25762168 ----------CCAGUUGGACACCUGAGCUAUAGUCACCGAUCGUGGCCACCACCUGGUCUCGAUCCGCGCUCUGUACCACACCAUAGCUACAGAGGUGAUAUC ----------.(((........))).......(((((((((((.(((((.....))))).))))).....((((((.(........).))))))))))))... ( -29.20, z-score = -1.49, R) >consensus __________CCACUUGGUCACUUCAGCUAUAGUCACCGAUCGUGGCCACCACCUGGUCCCGAUCCGCACUCUGUACCACACCACAGCUACAGAGGCGACAAC ................................(((...(((((.(((((.....))))).)))))....(((((((.(........).)))))))..)))... (-17.16 = -18.44 + 1.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:50:59 2011