| Sequence ID | dm3.chr3LHet |
|---|---|
| Location | 969,035 – 969,162 |
| Length | 127 |
| Max. P | 0.994137 |
| Location | 969,035 – 969,162 |
|---|---|
| Length | 127 |
| Sequences | 5 |
| Columns | 128 |
| Reading direction | reverse |
| Mean pairwise identity | 77.86 |
| Shannon entropy | 0.39373 |
| G+C content | 0.54488 |
| Mean single sequence MFE | -41.84 |
| Consensus MFE | -31.18 |
| Energy contribution | -30.62 |
| Covariance contribution | -0.56 |
| Combinations/Pair | 1.30 |
| Mean z-score | -2.48 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.67 |
| SVM RNA-class probability | 0.994137 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3LHet 969035 127 - 2555491 AAUAUCAAGUCGGAGCUACGACCCUGCUACCGGCUUAUU-CCAGUUGGUCACUUCAGCUAUAGUCACCGAUCGUGGACACCACCUGAUCCCGAUCCGCACUCUGCACCACACCGCCGCUGCAGAGGCG ......((((((((((.........))).)))))))...-......(((.(((........))).)))(((((.(((((.....)).))))))))(((.(((((((.(........).)))))))))) ( -42.20, z-score = -2.92, R) >droSim1.chr2h_random 1700988 127 + 3178526 AAUAUAAAGUCGGAGCUACGACCCUGCUACCGGCUUAUU-CCUGUUGGUCACUUCAGUUAUAGUCACCGAUCGUGGCCACCACCUGGUCCCGAUCCGCACUCUGUACCACACCGCAGCUACAGAGGCG ......((((((((((.........))).)))))))...-......(((.(((........))).)))(((((.(((((.....))))).)))))(((.(((((((.(........).)))))))))) ( -43.40, z-score = -3.15, R) >droSec1.super_75 105953 126 + 156374 -AUAUCAAGUCGGAGCUACGACCCUGCUACCGACUUAUU-CCAGUUGGUCACUUAAGCUAUUGUCACCGAUCGUGGACACCACCUGAUCCCGAUCCGCACUCUGCACCACAACGCAGUUAUAGAGGCG -.....((((((((((.........))).)))))))...-......(((.((..........)).)))(((((.(((((.....)).))))))))(((.(((((....((......))..)))))))) ( -33.50, z-score = -1.56, R) >droYak2.chrU 26223439 127 + 28119190 AAUAUAAAGUCGGAGCUACAACGCACCUACCGGCUGAUU-ACAUUUGAUCACCUGAGCUGUAGGCACCGAUCGUGGCCACCACCUGGUCCCGAUCCGCACUCUGUACCACACCACAGCUACAGAGGCG ...........((.((......)).((((((((.(((((-(....)))))).)))....)))))..))(((((.(((((.....))))).)))))(((.(((((((.(........).)))))))))) ( -40.20, z-score = -2.50, R) >droAna3.scaffold_13250 2515866 128 + 3535662 ACAGUAUAGCUGAAGCUAAGACCCUGCUAUCAGCUUACUGGAAGAAGUUCAGCGGCAUCAUCAUCACUGAUCUUGGCCACCACCUGGUCUGGAUUGGUGGUCUGCAGCGCUACGCGACUGUAGAGGCA .(((((.(((((((((.........))).)))))))))))...........((..........((((..((((.(((((.....))))).))))..))))((((((((((...))).))))))).)). ( -49.90, z-score = -2.29, R) >consensus AAUAUAAAGUCGGAGCUACGACCCUGCUACCGGCUUAUU_CCAGUUGGUCACUUCAGCUAUAGUCACCGAUCGUGGCCACCACCUGGUCCCGAUCCGCACUCUGCACCACACCGCAGCUACAGAGGCG ......((((((((((.........))).)))))))................................(((((.(((((.....))))).))))).((.(((((((.(........).))))))))). (-31.18 = -30.62 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:50:58 2011