| Sequence ID | dm3.chr3LHet |
|---|---|
| Location | 948,353 – 948,417 |
| Length | 64 |
| Max. P | 0.740443 |
| Location | 948,353 – 948,417 |
|---|---|
| Length | 64 |
| Sequences | 4 |
| Columns | 64 |
| Reading direction | reverse |
| Mean pairwise identity | 64.88 |
| Shannon entropy | 0.56411 |
| G+C content | 0.59254 |
| Mean single sequence MFE | -21.43 |
| Consensus MFE | -12.61 |
| Energy contribution | -12.80 |
| Covariance contribution | 0.19 |
| Combinations/Pair | 1.46 |
| Mean z-score | -0.85 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.740443 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3LHet 948353 64 - 2555491 GCCUAGGAGUGCCUUCGGGCAUCCUAGGUAAGGUGGGUGCGGAUGGUCAUAACAUCUGCGACCA ((((((((.((((....))))))))))))......((((((((((.......))))))).))). ( -37.00, z-score = -5.58, R) >droSim1.chr3h_random 815524 50 - 1452968 --------------UUGGGCUUCCCAGGUAGGGCGGGUGUGGUGGGUCAAAACUUUUGUGACCA --------------..(.(((((((.....))).)))).)....(((((.........))))). ( -11.70, z-score = 1.24, R) >droYak2.chr2L 22243243 64 - 22324452 GUCCGGUAAAUCCUCCGGGCAUCCUAGGUUGGGUGGGUGCGCAUAGCCACGACAUCUGUGGCCA ..((((........))))((((((..........)))))).....((((((.....)))))).. ( -23.50, z-score = -0.42, R) >droEre2.scaffold_4929 22424379 53 - 26641161 -----------CCUCCAGGCAUCCUAGGUCGGGUGGGUGCGCAUGGUCACAACAUCUGCGGCUA -----------...((..((((((..........))))))(((.(((......))))))))... ( -13.50, z-score = 1.37, R) >consensus ___________CCUCCGGGCAUCCUAGGUAGGGUGGGUGCGCAUGGUCACAACAUCUGCGACCA ..................((((((..........))))))....(((((((.....))))))). (-12.61 = -12.80 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:50:57 2011