| Sequence ID | dm3.chr3LHet |
|---|---|
| Location | 917,652 – 917,744 |
| Length | 92 |
| Max. P | 0.527014 |
| Location | 917,652 – 917,744 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 57.93 |
| Shannon entropy | 0.59516 |
| G+C content | 0.48121 |
| Mean single sequence MFE | -24.81 |
| Consensus MFE | -8.81 |
| Energy contribution | -8.27 |
| Covariance contribution | -0.54 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.36 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.527014 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3LHet 917652 92 + 2555491 GGUAGCGCUGCUGGGCGAUGGCUCAGUCAUGCGAAGAUUUUUCCAGAUUUAAAUUCCGCCUGGAAAA-CACACACAAAAACUUAGACCGCACA------ (((..(((((((((((....)))))).)).))).....((((((((.............))))))))-.................))).....------ ( -25.02, z-score = -1.47, R) >droSim1.chr2h_random 1671558 77 - 3178526 GGCAAUGCUUCUGCGCGAUGGCUACGCCAAUUGAAGAUUUUUCCGGCUUAAAUUUUGGCCUGGAAAA-CACACGCACU--------------------- .(((.......)))(((.((((...)))).........((((((((((........)))).))))))-....)))...--------------------- ( -21.50, z-score = -1.56, R) >droEre2.scaffold_4784 2991103 99 - 25762168 GGUGGCGCUGCUGCUCGAAGGCUGCGCCACUCAUAGAUUUUCGCAAACGAAAUUUCCGCCUGGGAAAUCAUACCCACAAAAAAAAAAUUAGACCGCGAA ((((((((.(((.......))).))))))))........(((((...((.......))..((((........))))..................))))) ( -27.90, z-score = -1.61, R) >consensus GGUAGCGCUGCUGCGCGAUGGCUACGCCAAUCGAAGAUUUUUCCAGAUUAAAUUUCCGCCUGGAAAA_CACACACACAAA___A_A_____________ (((...(((..........)))...)))..........((((((((.((.......)).))))))))................................ ( -8.81 = -8.27 + -0.54)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:50:56 2011