| Sequence ID | dm3.chr3LHet |
|---|---|
| Location | 887,985 – 888,037 |
| Length | 52 |
| Max. P | 0.877511 |
| Location | 887,985 – 888,037 |
|---|---|
| Length | 52 |
| Sequences | 3 |
| Columns | 65 |
| Reading direction | forward |
| Mean pairwise identity | 51.10 |
| Shannon entropy | 0.63187 |
| G+C content | 0.45769 |
| Mean single sequence MFE | -11.40 |
| Consensus MFE | -10.61 |
| Energy contribution | -8.73 |
| Covariance contribution | -1.88 |
| Combinations/Pair | 1.64 |
| Mean z-score | -0.29 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.03 |
| SVM RNA-class probability | 0.877511 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3LHet 887985 52 + 2555491 -------------ACCGGGUCCUGAAGUGGUUGCCAAGAGUAGUUGGUAGUCCCUGAAAAUUACC -------------..((((.((......))(((((((......)))))))..))))......... ( -10.60, z-score = -0.09, R) >droSec1.super_174 20838 52 + 34763 -------------ACCGGGUCCUGAAGUGGUUGCCAAGAGUAGUUGGUAGUCCCAGAAAAAUGCC -------------...(((.((......))(((((((......))))))).)))........... ( -10.80, z-score = -0.41, R) >droYak2.chr3h 163430 65 + 261230 GGCAGUGUUUUAAAUUUUCAUUUGUGCUGGUUGCUUGUAUUUCUAAGCAAACCGCAAAAAACAGU .....((((((((((....)))).(((.(((((((((......))))).))))))).)))))).. ( -12.80, z-score = -0.37, R) >consensus _____________ACCGGGUCCUGAAGUGGUUGCCAAGAGUAGUUGGUAGUCCCAGAAAAAUACC .........................((.(((((((((......))))))).)))).......... (-10.61 = -8.73 + -1.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:50:56 2011