| Sequence ID | dm3.chr3LHet |
|---|---|
| Location | 860,770 – 860,833 |
| Length | 63 |
| Max. P | 0.755235 |
| Location | 860,770 – 860,833 |
|---|---|
| Length | 63 |
| Sequences | 3 |
| Columns | 63 |
| Reading direction | reverse |
| Mean pairwise identity | 54.59 |
| Shannon entropy | 0.63196 |
| G+C content | 0.52596 |
| Mean single sequence MFE | -18.27 |
| Consensus MFE | -5.62 |
| Energy contribution | -4.30 |
| Covariance contribution | -1.32 |
| Combinations/Pair | 1.70 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.31 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.59 |
| SVM RNA-class probability | 0.755235 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3LHet 860770 63 - 2555491 CUUGACGUGCCCUGCUCGAUUUUAUCAACGAGCUGGGCAACACACCUUUCAUAGACUGAAUAG ..((...(((((.(((((..........))))).)))))...))...((((.....))))... ( -17.70, z-score = -3.39, R) >dp4.Unknown_singleton_2151 10059 59 + 19390 ----CUUCUGCUUGUUGGAGCUGAUCAGUGAGAUCAGCAACGCACUGUUCGUACACCGUGAAA ----...............(((((((.....)))))))..(((..(((....)))..)))... ( -14.20, z-score = 0.12, R) >droPer1.super_70 98543 59 - 290266 ----CAGUCGGGGGUUCGAGCUGAUCGUUCAGUUCGGCAAGGCAUUGCGCGUAGACCGCGUAG ----..(((....((.((((((((....))))))))))..)))..((((((.....)))))). ( -22.90, z-score = -2.58, R) >consensus ____CAGUCGCCUGUUCGAGCUGAUCAAUGAGAUCGGCAACGCACUGUUCGUAGACCGAGUAG ...................(((((.(.....).))))).........((((.....))))... ( -5.62 = -4.30 + -1.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:50:55 2011