| Sequence ID | dm3.chr3LHet |
|---|---|
| Location | 772,252 – 772,322 |
| Length | 70 |
| Max. P | 0.973819 |
| Location | 772,252 – 772,322 |
|---|---|
| Length | 70 |
| Sequences | 3 |
| Columns | 74 |
| Reading direction | forward |
| Mean pairwise identity | 63.13 |
| Shannon entropy | 0.49638 |
| G+C content | 0.35086 |
| Mean single sequence MFE | -17.10 |
| Consensus MFE | -9.25 |
| Energy contribution | -8.27 |
| Covariance contribution | -0.98 |
| Combinations/Pair | 1.45 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.90 |
| SVM RNA-class probability | 0.973819 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3LHet 772252 70 + 2555491 UUGAAAU-UAAAUUGUGUCACAAAG--UUGCGACACA-UCUUUGGUGGCAUUGACUUUGGGUUGUAUCGUAUUG .((..((-((((.((((((.((...--.)).))))))-..))))))..))..(((.....)))........... ( -12.50, z-score = 0.22, R) >droSec1.super_150 78962 69 + 93350 UUGAACUCUUGUUUUUCUUAGAAUACUUUGUUGCACAAUUCUUGCAGGAAAAGUACUAAGGGUUCAUUG----- .((((((((((((((....))))((((((.(((((.......)))))..)))))).))))))))))...----- ( -17.30, z-score = -2.59, R) >droSim1.chrU 6186585 69 + 15797150 UUGAACUCUUGUAUUUCUUAGAAUACUUUGUUGCACAAUUCUUGCAGGAGAAGUACUAAGGGUUCAUUG----- .((((((((((((((((((...........(((((.......)))))))))))))).)))))))))...----- ( -21.50, z-score = -3.87, R) >consensus UUGAACUCUUGUUUUUCUUAGAAUACUUUGUUGCACAAUUCUUGCAGGAAAAGUACUAAGGGUUCAUUG_____ .((((((((((((((...........(((.(((((.......))))).)))))))).)))))))))........ ( -9.25 = -8.27 + -0.98)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:50:52 2011