| Sequence ID | dm3.chr3LHet |
|---|---|
| Location | 757,667 – 757,721 |
| Length | 54 |
| Max. P | 0.892998 |
| Location | 757,667 – 757,721 |
|---|---|
| Length | 54 |
| Sequences | 3 |
| Columns | 59 |
| Reading direction | reverse |
| Mean pairwise identity | 79.66 |
| Shannon entropy | 0.28016 |
| G+C content | 0.51800 |
| Mean single sequence MFE | -18.97 |
| Consensus MFE | -11.41 |
| Energy contribution | -11.97 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.53 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.11 |
| SVM RNA-class probability | 0.892998 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3LHet 757667 54 - 2555491 -----CCCUAGUGGGUAGUGACCAAGAGGUGGUCACGUUUCUCAAGUUGGCACCCAAAG -----......(((((.(((((((.....)))))))(((.........))))))))... ( -17.60, z-score = -1.66, R) >droSim1.chr2R_random 548017 59 - 2996586 CCCAACAUUAGAGCUUAGUGAGCGAGAUAUGGUCACGUGUCUCAAGUUGGCCCUCGAAG .(((((......((((...))))((((((((....))))))))..)))))......... ( -19.90, z-score = -3.15, R) >droSec1.super_281 11779 59 - 16570 CCCAACAUUAGAGCUUAGUGAGCGAGAGAUGGUCACGUUUCUCAAGUUGGCCCUCGAAG .(((((......((((...))))((((((((....))))))))..)))))......... ( -19.40, z-score = -2.79, R) >consensus CCCAACAUUAGAGCUUAGUGAGCGAGAGAUGGUCACGUUUCUCAAGUUGGCCCUCGAAG .(((((......((.......))((((((((....))))))))..)))))......... (-11.41 = -11.97 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:50:52 2011