| Sequence ID | dm3.chr3LHet |
|---|---|
| Location | 753,658 – 753,735 |
| Length | 77 |
| Max. P | 0.508089 |
| Location | 753,658 – 753,735 |
|---|---|
| Length | 77 |
| Sequences | 4 |
| Columns | 77 |
| Reading direction | reverse |
| Mean pairwise identity | 61.47 |
| Shannon entropy | 0.63328 |
| G+C content | 0.46104 |
| Mean single sequence MFE | -18.00 |
| Consensus MFE | -5.59 |
| Energy contribution | -6.22 |
| Covariance contribution | 0.62 |
| Combinations/Pair | 1.40 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.31 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.508089 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3LHet 753658 77 - 2555491 UCGAAGACAGGUUCGUGACAUUUCACAGCCCGAUUCUAAGAUUUCAUCAGCCGAGGAAAGCGAGCAUAAUGAGGUCA ..(((..(.((((.((((....)))))))).).)))...((((((((..((((.......)).))...)))))))). ( -18.70, z-score = -1.27, R) >droSim1.chr2h_random 2879086 77 + 3178526 UCGAAGACAUGUUUAUGUCAUAUUACAGCCCGAUUCCGAGGUUACAUUAGCCGAGGAAGGCGAGCUUGAUGAGGACA .....(((((....))))).(((((.(((.((.((((..(((((...)))))..))))..)).))))))))...... ( -21.60, z-score = -2.30, R) >droSec1.super_66 141667 77 + 176163 UCGAAGACAUGUUCAUGUCAUUUCACAGCUCGAUUCCGAGGUUACAUCAGCCGAGGAAGGCGAGUUUGAUGAGGACA .....(((((....))))).((((((((((((.((((..((((.....))))..))))..)))).))).)))))... ( -25.40, z-score = -2.63, R) >droGri2.scaffold_15128 201073 63 - 208649 -----------UUAAAAAACUAUCAC-GCACGUACCACCGCAAACAGUUGGUCAACAAAGCGACCUAUACCAACU-- -----------..............(-((..((((((.(.......).))))..))...))).............-- ( -6.30, z-score = -0.49, R) >consensus UCGAAGACAUGUUCAUGACAUAUCACAGCCCGAUUCCGAGGUUACAUCAGCCGAGGAAAGCGAGCUUGAUGAGGACA ................(((........((.((.((((..((((.....))))..))))..)).))........))). ( -5.59 = -6.22 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:50:51 2011