| Sequence ID | dm3.chr3LHet |
|---|---|
| Location | 703,804 – 703,886 |
| Length | 82 |
| Max. P | 0.948211 |
| Location | 703,804 – 703,886 |
|---|---|
| Length | 82 |
| Sequences | 3 |
| Columns | 84 |
| Reading direction | forward |
| Mean pairwise identity | 78.40 |
| Shannon entropy | 0.29517 |
| G+C content | 0.56273 |
| Mean single sequence MFE | -30.67 |
| Consensus MFE | -22.86 |
| Energy contribution | -21.43 |
| Covariance contribution | -1.43 |
| Combinations/Pair | 1.37 |
| Mean z-score | -2.17 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.54 |
| SVM RNA-class probability | 0.948211 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3LHet 703804 82 + 2555491 UUACAGCGCG--GCGGCAGCGUGUGGUCGCUGUCGCCGAGUGUGGUUCGAAGGGUAGCACGGAGAAGAAGUGAGUGACACAAAU ((((.((.((--(((((((((......))))))))))).((((...((....))..)))).........))..))))....... ( -32.20, z-score = -2.56, R) >droSec1.super_28 233524 84 + 873875 UUACAGCGCGCGGCGGCAGCGUGUGGUCGCUGUCGCCGAGUGUGGUUCGAAGGAUAGCACGGAGAAGAAGUGAGUGACACAAAU ((((..(((.(((((((((((......))))))))))).((((...((....))..)))).........))).))))....... ( -34.20, z-score = -2.71, R) >droMoj3.scaffold_6500 445376 77 - 32352404 UUGUAGCUGG--GCGACAGCGU-UUGCAGCUGUCGCUGAGUGUGGUUC----GGUGGCAUGCACAAGAAAUAGUUGAGACAAAG ((((.(((.(--((((((((..-.....))))))))).)))....(((----.(((.....)))..))).........)))).. ( -25.60, z-score = -1.22, R) >consensus UUACAGCGCG__GCGGCAGCGUGUGGUCGCUGUCGCCGAGUGUGGUUCGAAGGGUAGCACGGAGAAGAAGUGAGUGACACAAAU ((((........(((((((((......)))))))))...((((...((....))..)))).........))))........... (-22.86 = -21.43 + -1.43)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:50:50 2011