| Sequence ID | dm3.chr3LHet |
|---|---|
| Location | 695,382 – 695,438 |
| Length | 56 |
| Max. P | 0.984143 |
| Location | 695,382 – 695,438 |
|---|---|
| Length | 56 |
| Sequences | 4 |
| Columns | 63 |
| Reading direction | forward |
| Mean pairwise identity | 60.56 |
| Shannon entropy | 0.62337 |
| G+C content | 0.46758 |
| Mean single sequence MFE | -18.62 |
| Consensus MFE | -9.32 |
| Energy contribution | -10.01 |
| Covariance contribution | 0.69 |
| Combinations/Pair | 1.40 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.16 |
| SVM RNA-class probability | 0.984143 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3LHet 695382 56 + 2555491 ------CUAUA-GUGCGUGAGUGUGUGUGAUGGAACGGGCCUACCGGCAUAUACAUACAUAAA ------.....-..((....))((((((((((...(((.....)))...))).)))))))... ( -15.80, z-score = -0.97, R) >droSim1.chrU 1076848 57 + 15797150 ------CUGUGCGUGAGUAUGUGUGUGUGAUUGAAUGGGCCUACCGGCAUAUACAUACAUGAA ------..((((....))))(((((((((..((..(((.....))).))..)))))))))... ( -17.10, z-score = -1.45, R) >droSec1.super_54 137555 57 + 216317 ------CUGUGCGUGAGUGUGUGUGUGUGAUUGAAUGGGCCUACCGGCAUAUACAUACAUGAA ------....((....))(((((((((((......(((.....))).)))))))))))..... ( -18.30, z-score = -1.79, R) >droVir3.scaffold_12963 123378 63 - 20206255 CAAUCACUCUCAACUGAGAACUCUCUCUGAGAGGGGGUUUUUCCCAGGCAAUGGAAAUACCCA ......((((((...(((....)))..)))))).((((.(((((........))))).)))). ( -23.30, z-score = -2.84, R) >consensus ______CUGUGCGUGAGUAAGUGUGUGUGAUUGAAUGGGCCUACCGGCAUAUACAUACAUGAA ................((((((((((((.......(((.....)))))))))))))))..... ( -9.32 = -10.01 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:50:49 2011