| Sequence ID | dm3.chr3LHet |
|---|---|
| Location | 636,796 – 636,902 |
| Length | 106 |
| Max. P | 0.560319 |
| Location | 636,796 – 636,902 |
|---|---|
| Length | 106 |
| Sequences | 3 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 54.63 |
| Shannon entropy | 0.64397 |
| G+C content | 0.46720 |
| Mean single sequence MFE | -25.63 |
| Consensus MFE | -10.26 |
| Energy contribution | -10.94 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.48 |
| Mean z-score | -1.15 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.560319 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3LHet 636796 106 + 2555491 ACCUUUCUGCUAUCCAAACAGAGCCG-UACU--UUCCCGGGCUUUUUCACUAAGACUACUAGUGAAGACCAGGCGCUAUCAGAAUCUUCAAUUACACCAAGCUUAAGCA ....(((((.((.((.....(((((.-....--......)))))((((((((.......))))))))....))...)).)))))................((....)). ( -18.30, z-score = 0.07, R) >droEre2.scaffold_4929 23284806 106 + 26641161 AGCCUGUGUGCAUCCGGGCAAAGUCG-AAUU--UCAUUAGGUUUGACGACUAGACGCGUUGGAGAACUCCAUGGGCUAACAGACGGCUAAAUGCAAUCUAAUUGCAGCA .(((((........)))))...((((-((((--......))))))))........((..((((....))))...((....(((..((.....))..)))....)).)). ( -27.40, z-score = 0.27, R) >triCas2.ChLG7 11639 109 + 17478683 ACCUUCCGAAAAUCUAUACAGAACCGAUACUCGUUAUUUGGCUUCUUCACCAUCACAACUGGUGAAGACCACGCCGACCGCGACGGUUCAAUUACGCCUAGAGUAAGCA ....................((((((....((((...(((((.(((((((((.......)))))))))....)))))..))))))))))..((((.......))))... ( -31.20, z-score = -3.79, R) >consensus ACCUUCCGAAAAUCCAAACAGAGCCG_UACU__UUAUUAGGCUUCUUCACUAAAACAACUGGUGAAGACCACGCGCUAACAGACGGUUCAAUUACACCUAGAUUAAGCA ....................((((((.............((..(((((((((.......))))))))))).............))))))..((((.......))))... (-10.26 = -10.94 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:50:45 2011