| Sequence ID | dm3.chr3LHet |
|---|---|
| Location | 617,820 – 617,913 |
| Length | 93 |
| Max. P | 0.958174 |
| Location | 617,820 – 617,913 |
|---|---|
| Length | 93 |
| Sequences | 3 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 53.26 |
| Shannon entropy | 0.65250 |
| G+C content | 0.56356 |
| Mean single sequence MFE | -33.84 |
| Consensus MFE | -13.18 |
| Energy contribution | -12.77 |
| Covariance contribution | -0.42 |
| Combinations/Pair | 1.64 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.65 |
| SVM RNA-class probability | 0.958174 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3LHet 617820 93 - 2555491 AUUGCGCUGGGAAGGAAGUUGACUCGAUCGCCCAGCAGGAGAGCACGUUGGUGGACUGCCGACCUCUGCGCUGCAAGGCGCGAAGUCCGAAGA .....((((((.....((....))......)))))).((((((...((((((.....)))))))))((((((....))))))...)))..... ( -32.20, z-score = 0.46, R) >droVir3.scaffold_13036 835869 90 + 1135500 CGCAUGUUUGAGAGGCACCGUA--AGGUCAACC-UUAAGCAUGUGAAGUGGUGGACGAAUCAGUUAAGCACCAAGCGGUGGAUGGUCCGGUCU ((((((((((((.(..(((...--.)))...))-)))))))))))......(((((..(((.......((((....))))))).))))).... ( -31.01, z-score = -2.15, R) >droGri2.scaffold_15040 119155 90 - 162499 CGCUUGUUUGAGAGGCACCGAA--AGGUCAACC-UCAAACGAGUGAAGUGGUGGUCGCAUGAGUUGAGCGUUAAGCGUCGGUCAGUGCGGUCC ((((((((((((.(..(((...--.)))...))-))))))))))).......(..(((((..(..((((.....)).))..)..)))))..). ( -38.30, z-score = -4.06, R) >consensus CGCAUGUUUGAGAGGCACCGAA__AGGUCAACC_UCAAGCGAGUGAAGUGGUGGACGAAUGAGUUAAGCGCUAAGCGGCGGAAAGUCCGGUCA ((((((((((...((.(((......)))...))..))))))))))..............((..((((.((((....)))).))))..)).... (-13.18 = -12.77 + -0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:50:44 2011