| Sequence ID | dm3.chr3LHet |
|---|---|
| Location | 558,900 – 559,020 |
| Length | 120 |
| Max. P | 0.939237 |
| Location | 558,900 – 559,020 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 69.44 |
| Shannon entropy | 0.56853 |
| G+C content | 0.51969 |
| Mean single sequence MFE | -40.35 |
| Consensus MFE | -17.03 |
| Energy contribution | -17.28 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.46 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.45 |
| SVM RNA-class probability | 0.939237 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3LHet 558900 120 + 2555491 UUGCCUAGGAUAGUUCCCUUUCUAAGGUAGCGAUUCUUUCCAGUAGGUUCGCCACCUCUAUAGUUGUGGAAAUUUCUAGUCUGCCCUGCUUUGGCAGGCUGCGGAGUACCAAUCGGAUUC .(((((((((...(((((...(((((((.((((..((.......))..)))).))))...)))..).))))..))))))((((((((((....)))))..))))))))((....)).... ( -38.30, z-score = -1.66, R) >droSim1.chrU 11535660 119 - 15797150 UGGCCUUGGAUAGUUCCCUUUCUAAGGUUGCGAUUCUUUCCAGUAGGUUCGCCACCUCUACAGUUGUGGAA-UUUGUAAUCUGCCCUGCUUUGGCAGGCUGCGGAAUACCACUCGGAAUU .(((((((((.((....)).)))))))))........(((((((.(((...((...(((((....))))).-...(((..(((((.......)))))..)))))...)))))).)))).. ( -40.40, z-score = -2.20, R) >droSec1.super_28 188503 119 + 873875 UGGCCUUGGAUAGUUCCCUUUCUAAGGUUGCGAUUCUUUCCAGUAGGUUCGCCACCUCUACAGUUGUGGAA-UUUGUAGUCUGCCCUGCUAUGGCAGGCUGCGGAGUACCACUCGGAUUC .(((((((((.((....)).))))))))).........((((((.(((...((...(((((....))))).-...((((((((((.......))))))))))))...)))))).)))... ( -44.80, z-score = -2.86, R) >droYak2.chrU 120840 119 + 28119190 UUGCCUUCACCAUCUCUGACUCUAGGUGUGCGAUCCUUUCCAUUAGGGCCGCCACUUGUACAGUCGUGGAG-UCCGUAAGCUGCCCCGUUGCUGCGGGCUGCAGGUUACUUGCCGCUUUC .................((((.((((((.(((..(((.......)))..)))))))))...))))((((..-...((((.(((((((((....)))))..)))).))))...)))).... ( -42.90, z-score = -1.88, R) >droEre2.scaffold_4845 21614312 119 - 22589142 UUGCCUUCACCAGCUCCUACUCUACGUGUGCGAUCCUUUCCAUUUGGUCCGCCACUUGUACAGUCGUGGAG-UCCGUAAGCUGCCUCGUUGCUGCGGGCUGCAGUUUACUUGCCGCUUUC ..((........(((((.(((.((((((.(((..((.........))..))))))..))).)))...))))-)..((((((((((((((....)))))..))))))))).....)).... ( -37.70, z-score = -2.01, R) >droAna3.scaffold_12911 1089346 114 + 5364042 UUGCCUGUAGGAGAUCCUUCUCUAGGUUUGCGAUUCUUGCAAUAAGCGUCGCAAUCU-----GUCGAGGGG-UCCACAUCCUGUCCUGGCGCUUCCAUCUGGGCAGUUCUAGUGAGUUUU .......(((((((((((((..((((((.(((((.((((...)))).))))))))))-----)..))))))-))....)))))((((((.((((((....))).))).)))).))..... ( -38.00, z-score = -1.58, R) >consensus UUGCCUUGAAUAGUUCCCUCUCUAAGGUUGCGAUUCUUUCCAGUAGGUUCGCCACCUCUACAGUCGUGGAA_UCCGUAAUCUGCCCUGCUGCGGCAGGCUGCGGAGUACCAGUCGGAUUC .............((((....((.((...((((.(((.......))).))))...))....))....))))....(((.((((((((((....)))))..))))).)))........... (-17.03 = -17.28 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:50:40 2011